Complete Genome Sequence of the Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Alteromonas sp Strain SN2

被引：33

作者：

Jin, Hyun Mi ^{[2
]}

Jeong, Haeyoung ^{[3
]}

Moon, Eun-Joung ^{[4
]}

Math, Renukaradhya K. ^{[2
]}

Lee, Kangseok ^{[2
]}

Kim, Hae-Jin ^{[4
]}

Jeon, Che Ok ^{[2
]}

Oh, Tae Kwang ^{[1
]}

Kim, Jihyun F. ^{[4
,5
]}

机构：

[1] 21C Frontier Microbial Genom & Applicat Ctr, Taejon 305806, South Korea

[2] Chung Ang Univ, Sch Biol Sci, Seoul 156756, South Korea

[3] Korea Res Inst Biosci & Biotechnol, Ind Biotechnol & Bioenergy Res Ctr, Taejon 305806, South Korea

[4] Ensoltek Co Ltd, Technol Res Inst, Taejon 305510, South Korea

[5] UST, Biosyst & Bioengn Program, Taejon 305333, South Korea

来源：

JOURNAL OF BACTERIOLOGY | 2011年 / 193卷 / 16期

关键词：

ORGANIC-MATTER; RNA GENES;

D O I：

10.1128/JB.05252-11

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Alteromonas sp. strain SN2, able to metabolize polycyclic aromatic hydrocarbons, was isolated from a crude oil-contaminated sea-tidal flat. Here we report the complete 4.97-Mb genome sequence and annotation of strain SN2. These will advance the understanding of strain SN2's adaptation to the sea-tidal flat ecosystem and its pollutant metabolic versatility.

引用

页码：4292 / 4293

页数：2

共 10 条

[1] Base-calling of automated sequencer traces using phred.: II.: Error probabilities [J].

Ewing, B ;

Green, P .

GENOME RESEARCH, 1998, 8 (03) :186-194

[2] Base-calling of automated sequencer traces using phred.: I.: Accuracy assessment [J].

Ewing, B ;

Hillier, L ;

Wendl, MC ;

Green, P .

GENOME RESEARCH, 1998, 8 (03) :175-185

[3] Aromatic hydrocarbon dioxygenases in environmental biotechnology [J].

Gibson, DT ;

Parales, RE .

CURRENT OPINION IN BIOTECHNOLOGY, 2000, 11 (03) :236-243

[4] Consed: A graphical tool for sequence finishing [J].

Gordon, D ;

Abajian, C ;

Green, P .

GENOME RESEARCH, 1998, 8 (03) :195-202

[5] IslandPath: aiding detection of genomic islands in prokaryotes [J].

Hsiao, W ;

Wan, I ;

Jones, SJ ;

Brinkman, FSL .

BIOINFORMATICS, 2003, 19 (03) :418-420

[6] Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter [J].

Ivars-Martinez, Elena ;

Martin-Cuadrado, Ana-Belen ;

D'Auria, Giuseppe ;

Mira, Alex ;

Ferriera, Steve ;

Johnson, Justin ;

Friedman, Robert ;

Rodriguez-Valera, Francisco .

ISME JOURNAL, 2008, 2 (12) :1194-1212

[7] Influence of Soil Components on the Biodegradation of Benzene, Toluene, Ethylbenzene, and o-, m-, and p-Xylenes by the Newly Isolated Bacterium Pseudoxanthomonas spadix BD-a59 [J].

Kim, Jeong Myeong ;

Le, Ngoc Thuan ;

Chung, Bok Sil ;

Park, Jin Ho ;

Bae, Jin-Woo ;

Madsen, Eugene L. ;

Jeon, Che Ok .

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2008, 74 (23) :7313-7320

[8] RNAmmer:: consistent and rapid annotation of ribosomal RNA genes [J].

Lagesen, Karin ;

Hallin, Peter ;

Rodland, Einar Andreas ;

Stærfeldt, Hans-Henrik ;

Rognes, Torbjorn ;

Ussery, David W. .

NUCLEIC ACIDS RESEARCH, 2007, 35 (09) :3100-3108

[9] tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence [J].

Lowe, TM ;

Eddy, SR .

NUCLEIC ACIDS RESEARCH, 1997, 25 (05) :955-964

[10] Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea [J].

McCarren, Jay ;

Becker, Jamie W. ;

Repeta, Daniel J. ;

Shi, Yanmei ;

Young, Curtis R. ;

Malmstrom, Rex R. ;

Chisholm, Sallie W. ;

DeLong, Edward F. .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (38) :16420-16427

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