The complete mitochondrial genome of the Cyphastrea serailia

被引：1

作者：

Niu, Wentao ^{[1
]}

Yu, Shuangen ^{[1
]}

Chen, Bin ^{[1
]}

Suharsono, Suharsono ^{[2
]}

机构：

[1] State Ocean Adm, Inst Oceanog 3, Lab Marine Biol & Ecol, Xiamen, Peoples R China

[2] Res Ctr Oceanog LIPI, Jakarta, Indonesia

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2017年 / 2卷 / 02期

基金：

中国国家自然科学基金;

关键词：

Coral; mitogenome; phylogeny;

D O I：

10.1080/23802359.2017.1347904

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

In this study, the complete mitogenome sequence of stony coral, Cyphastrea serailia (Scleractinia), has been decoded for the first time by next-generation sequencing and genome assembly. The assembled mitogenome, consisting of 17,138 bp, has unique 13 protein-coding genes (PCGs), 3 transfer RNAs, and 2 ribosomal RNAs genes. The complete mitogenome of Cyphastrea serailia showed 97% identity to Montastraea annularis. The complete mitogenome provides essential and important DNA molecular data for further phylogenetic and evolutionary analysis for coral phylogeny.

引用

页码：415 / 416

页数：2

共 6 条

[1] MITOS: Improved de novo metazoan mitochondrial genome annotation [J].

Bernt, Matthias ;

Donath, Alexander ;

Juehling, Frank ;

Externbrink, Fabian ;

Florentz, Catherine ;

Fritzsch, Guido ;

Puetz, Joern ;

Middendorf, Martin ;

Stadler, Peter F. .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2013, 69 (02) :313-319

[2] ARWEN:: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences [J].

Laslett, Dean ;

Canback, Bjorn .

BIOINFORMATICS, 2008, 24 (02) :172-175

[3] Next-generation sequencing yields the complete mitogenome of massive coral, Porites lutea (Cnidaria: Poritidae) [J].

Niu, Wentao ;

Lin, Rongcheng ;

Shi, Xiaofeng ;

Chen, Ching-Hung ;

Shen, Kang-Ning ;

Hsiao, Chung-Der .

MITOCHONDRIAL DNA PART B-RESOURCES, 2016, 1 (01) :8-9

[4]

Swart PK, 2012, SPECIAL PUBLICATION, V41

[5]

Tamura K, 2013, MOL BIOL EVOL, V30, P2725, DOI [10.1093/molbev/mst197, 10.1093/molbev/msr121]

[6] Automatic annotation of organellar genomes with DOGMA [J].

Wyman, SK ;

Jansen, RK ;

Boore, JL .

BIOINFORMATICS, 2004, 20 (17) :3252-3255

← 1 →