Crystallographic Statistical Study of Decavanadate Anion Based-Structures: Toward a Prediction of Noncovalent Interactions

被引:32
作者
Bosnjakovic-Pavlovic, Nada [1 ,2 ]
Prevost, Josselin [1 ,2 ]
Spasojevic-de Bire, Anne [1 ]
机构
[1] Ecole Cent Paris, CNRS, Lab Struct Proprietes & Modelisat Solides SPMS, UMR 8580, F-92295 Chatenay Malabry, France
[2] Univ Belgrade, Fac Phys Chem, Belgrade 11001, Serbia
关键词
X-RAY-STRUCTURE; CRYSTAL-STRUCTURE; HYDROGEN-BOND; SARCOPLASMIC-RETICULUM; VANADIUM DISTRIBUTION; LABILE OXOVANADATES; OXIDATIVE STRESS; DNA-BINDING; IN-VIVO; VANADATE;
D O I
10.1021/cg200236d
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We have retrieved from the Cambridge Structural Database (CSD), the Inorganic Crystal Structure Database (ICSD), and the Protein Data Bank (PDB) decavanadate-based compounds, to find intermolecular interactions between decavanadate oxygen atoms and different proton donor types (D = O, N, C). Sixty-three different structures have been found containing decavanadate anion, leading to 2975 intermolecular contacts belonging to the 48 structures for which the hydrogen bonds have been localized. In a previous study (Bosnjakovic-Pavlovic et al., Inorg. Chem., 2009), we predicted the preferential noncovalent interactions with the different oxygen atoms of the decavanadate anion. These predictions are confirmed in the present study. Noncovalent interactions are strongly different as a function of the oxygen atom type. The Ob, triply linked, and Oc, double-linked oxygen atoms, for which the electrostatic potential in the vicinity has the lowest value, are mainly involved in the strong O-H center dot center dot center dot O and N-H center dot center dot center dot O interactions, while the mono-linked Of or Og is mainly involved in the weakest noncovalent interactions such as C-H center dot center dot center dot O or cation interactions. Binding properties of decavanadate anions in biological systems are illustrated using PDB. The anion binding behavior in small-molecule structures and in macromolecular structures are in good agreement. These results are important in the context of the various biological applications of the decavanadate such as, for example, inhibition of the Ca2+ ATPase, myosin ATPase, and new development in insulin mimetic.
引用
收藏
页码:3778 / 3789
页数:12
相关论文
共 119 条
[1]  
Allen F. H., 2008, HDB CHEMOINFORMATICS
[2]   The Cambridge Structural Database: a quarter of a million crystal structures and rising [J].
Allen, FH .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1) :380-388
[3]  
[Anonymous], 2009, MOLEKEL VERSION 5 4
[4]   Decavanadate effects in biological systems [J].
Aureliano, M ;
Gândara, RMC .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2005, 99 (05) :979-985
[5]   Oxidative stress in toadfish (Halobactrachus didactylus) cardiac muscle -: Acute exposure to vanadate oligomers [J].
Aureliano, M ;
Joaquim, N ;
Sousa, A ;
Martins, H ;
Coucelo, JM .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2002, 90 (3-4) :159-165
[6]   Decavanadate: a journey in a search of a role [J].
Aureliano, Manuel .
DALTON TRANSACTIONS, 2009, (42) :9093-9100
[7]   Decavanadate (V10O286-) and oxovanadates: Oxometalates with many biological activities [J].
Aureliano, Manuel ;
Crans, Debbie C. .
JOURNAL OF INORGANIC BIOCHEMISTRY, 2009, 103 (04) :536-546
[8]   CRYSTAL-STRUCTURE OF HEXAKIS(ETHANOLAMMONIUM) DECAVANADATE DIHYDRATE, (C2H8NO)(6)(V10O28)(H2O)(2) [J].
AVERBUCHPOUCHOT, MT ;
DURIF, A .
ZEITSCHRIFT FUR KRISTALLOGRAPHIE, 1995, 210 (02) :156-157
[9]   CRYSTAL-STRUCTURE OF HEXAKIS(2-AMMONIUM-2-METHYL-1-PROPANOL) DECAVANADATE, (C4H12NO)(6)(V10O28) [J].
AVERBUCHPOUCHOT, MT .
ZEITSCHRIFT FUR KRISTALLOGRAPHIE, 1995, 210 (05) :371-372
[10]  
AVERBUCHPOUCHOT MT, 1994, EUR J SOL STATE INOR, V31, P351