Long non-coding RNAs in development and disease: conservation to mechanisms

被引:143
作者
Tsagakis, Ioannis [1 ,2 ]
Douka, Katerina [1 ,2 ]
Birds, Isabel [1 ,2 ]
Aspden, Julie L. [1 ,2 ]
机构
[1] Univ Leeds, Sch Mol & Cellular Biol, Fac Biol Sci, Leeds LS2 9JT, W Yorkshire, England
[2] Univ Leeds, LeedsOm, Leeds, W Yorkshire, England
基金
英国生物技术与生命科学研究理事会;
关键词
long non-coding RNA; long intergenic non-coding RNA; anti-sense lncRNAs; translation; conservation; stem cells; development; X chromosome inactivation; neurodegenerative disease; cancer; diabetes; XIST RNA; CHROMOSOMAL LOCALIZATION; NUCLEAR-LOCALIZATION; BC200; RNA; HNRNP U; GENE; EXPRESSION; TRANSLATION; EVOLUTION; CANCER;
D O I
10.1002/path.5405
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Our genomes contain the blueprint of what makes us human and many indications as to why we develop disease. Until the last 10 years, most studies had focussed on protein-coding genes, more specifically DNA sequences coding for proteins. However, this represents less than 5% of our genomes. The other 95% is referred to as the 'dark matter' of our genomes, our understanding of which is extremely limited. Part of this 'dark matter' includes regions that give rise to RNAs that do not code for proteins. A subset of these non-coding RNAs are long non-coding RNAs (lncRNAs), which in particular are beginning to be dissected and their importance to human health revealed. To improve our understanding and treatment of disease it is vital that we understand the molecular and cellular function of lncRNAs, and how their misregulation can contribute to disease. It is not yet clear what proportion of lncRNAs is actually functional; conservation during evolution is being used to understand the biological importance of lncRNA. Here, we present key themes within the field of lncRNAs, emphasising the importance of their roles in both the nucleus and the cytoplasm of cells, as well as patterns in their modes of action. We discuss their potential functions in development and disease using examples where we have the greatest understanding. Finally, we emphasise why lncRNAs can serve as biomarkers and discuss their emerging potential for therapy. (c) 2020 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of Pathological Society of Great Britain and Ireland.
引用
收藏
页码:480 / 495
页数:16
相关论文
共 109 条
  • [101] Identification and Properties of 1,119 Candidate LincRNA Loci in the Drosophila melanogaster Genome
    Young, Robert S.
    Marques, Ana C.
    Tibbit, Charlotte
    Haerty, Wilfried
    Bassett, Andrew R.
    Liu, Ji-Long
    Ponting, Chris P.
    [J]. GENOME BIOLOGY AND EVOLUTION, 2012, 4 (04): : 427 - 442
  • [102] Ensembl 2018
    Zerbino, Daniel R.
    Achuthan, Premanand
    Akanni, Wasiu
    Amode, M. Ridwan
    Barrell, Daniel
    Bhai, Jyothish
    Billis, Konstantinos
    Cummins, Carla
    Gall, Astrid
    Giron, Carlos Garcia
    Gil, Laurent
    Gordon, Leo
    Haggerty, Leanne
    Haskell, Erin
    Hourlier, Thibaut
    Izuogu, Osagie G.
    Janacek, Sophie H.
    Juettemann, Thomas
    To, Jimmy Kiang
    Laird, Matthew R.
    Lavidas, Ilias
    Liu, Zhicheng
    Loveland, Jane E.
    Maurel, Thomas
    McLaren, William
    Moore, Benjamin
    Mudge, Jonathan
    Murphy, Daniel N.
    Newman, Victoria
    Nuhn, Michael
    Ogeh, Denye
    Ong, Chuang Kee
    Parker, Anne
    Patricio, Mateus
    Riat, Harpreet Singh
    Schuilenburg, Helen
    Sheppard, Dan
    Sparrow, Helen
    Taylor, Kieron
    Thormann, Anja
    Vullo, Alessandro
    Walts, Brandon
    Zadissa, Amonida
    Frankish, Adam
    Hunt, Sarah E.
    Kostadima, Myrto
    Langridge, Nicholas
    Martin, Fergal J.
    Muffato, Matthieu
    Perry, Emily
    [J]. NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) : D754 - D761
  • [103] A Novel RNA Motif Mediates the Strict Nuclear Localization of a Long Noncoding RNA
    Zhang, Bing
    Gunawardane, Lalith
    Niazi, Farshad
    Jahanbani, Fereshteh
    Chen, Xin
    Valadkhan, Saba
    [J]. MOLECULAR AND CELLULAR BIOLOGY, 2014, 34 (12) : 2318 - 2329
  • [104] LncRNA MEG3 overexpression inhibits the development of diabetic retinopathy by regulating TGF-1 and VEGF
    Zhang, Daning
    Qin, Haixiang
    Leng, Ying
    Li, Xiangjun
    Zhang, Lei
    Bai, Dan
    Meng, Yujun
    Wang, Jingyi
    [J]. EXPERIMENTAL AND THERAPEUTIC MEDICINE, 2018, 16 (03) : 2337 - 2342
  • [105] lncRNA PAPAS tethered to the rDNA enhancer recruits hypophosphorylated CHD4/NuRD to repress rRNA synthesis at elevated temperatures
    Zhao, Zhongliang
    Sentuerk, Nevcin
    Song, Chenlin
    Grummt, Ingrid
    [J]. GENES & DEVELOPMENT, 2018, 32 (11-12) : 836 - 848
  • [106] Linc-RNA-RoR acts as a "sponge" against mediation of the differentiation of endometrial cancer stem cells by microRNA-145
    Zhou, Xi
    Gao, Qin
    Wang, Jianzhong
    Zhang, Xin
    Liu, Kaige
    Duan, Zhao
    [J]. GYNECOLOGIC ONCOLOGY, 2014, 133 (02) : 333 - 339
  • [107] MEG3 noncoding RNA: a tumor suppressor
    Zhou, Yunli
    Zhang, Xun
    Klibanski, Anne
    [J]. JOURNAL OF MOLECULAR ENDOCRINOLOGY, 2012, 48 (03) : R45 - R53
  • [108] The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans
    Zhou, ZL
    Luo, M
    Straesser, K
    Katahira, J
    Hurt, E
    Reed, R
    [J]. NATURE, 2000, 407 (6802) : 401 - 405
  • [109] Long Noncoding RNA MEG3 Interacts with p53 Protein and Regulates Partial p53 Target Genes in Hepatoma Cells
    Zhu, Juanjuan
    Liu, Shanshan
    Ye, Fuqiang
    Shen, Yuan
    Tie, Yi
    Zhu, Jie
    Wei, Lixin
    Jin, Yinghua
    Fu, Hanjiang
    Wu, Yongge
    Zheng, Xiaofei
    [J]. PLOS ONE, 2015, 10 (10):