Hyphomonas sediminis sp. nov., isolated from marine sediment

被引:1
作者
Wang, Lu [1 ]
He, Wei [1 ]
Gao, Zeng-Yu [1 ]
Zhang, Dao-Feng [1 ]
Huang, Jian-Ke [1 ]
Liu, Chuang [1 ]
Li, Wen-Jun [1 ,2 ,3 ,4 ]
Zhang, Ai Hua [1 ]
机构
[1] Hohai Univ, Coll Oceanog, Inst Marine Biotechnol & Bioresource Utilizat, Nanjing 201198, Jiangsu, Peoples R China
[2] Sun Yat Sen Univ, Sch Life Sci, State Key Lab Biocontrol, Southern Marine Sci & Engn Guangdong Lab Zhuhai, Guangzhou, Peoples R China
[3] Sun Yat Sen Univ, Guangdong Prov Key Lab Plant Resources, Sch Life Sci, Guangzhou, Peoples R China
[4] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, State Key Lab Desert & Oasis Ecol, Urumqi, Peoples R China
来源
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY | 2022年 / 115卷 / 09期
基金
中国博士后科学基金; 中国国家自然科学基金;
关键词
Hyphomonas sediminis sp; Nov; Marine sediment; bac120; tree; ANNOTATION; GENE; SEA;
D O I
10.1007/s10482-022-01765-1
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-staining-negative, aerobic and pear-shaped bacterial strain, designated WL0036(T), was isolated from coastal sediment sample collected in Nantong city, Jiangsu province of China (120 degrees 51 ' 13 '' E, 32 degrees 6 ' 26 '' N) in October 2020. Strain WL0036(T) was found to grow at 20-37 degrees C (optimum, 28 degrees C) with 0-9.0% NaCl (optimum, 2.5-4.0%) and displayed alkaliphilic growth with the pH range of pH 6.0-10.0 (optimum, pH 7.0-8.0). The polar lipids profile of strain WL0036(T) included phosphatidylcholine, phosphatidylethanolamine, glycolipid and an unidentified lipid. The major isoprenoid quinone was determined to be Q-11 and the major fatty acids were C-16:0, 11-methyl-C-18:1 omega 7c, and summed features 8 (C-18:1 omega 6c and/or C-18:1 omega 7c). The G + C content of genomic DNA was 61.8%. Phylogenetic trees constructed based on 16S rRNA gene sequence and bac120 gene set (a collection of 120 single-copy protein sequences prevalent in bacteria) indicted that strain WL0036(T) clustered with strains Hyphomonas neptunium ATCC 15444(T) and H. polymorpha PS728(T). The average nucleotide identities between strain WL0036(T) and strains H. neptunium ATCC 15444(T) and H. polymorpha PS728(T) were 80.7% and 81.2%, respectively. Strain WL0036(T) showed 22.8% and 23.2% of digital DNA-DNA hybridization identities with H. neptunium ATCC 15444(T) and H. polymorpha PS728(T), respectively. As inferred from the phenotypic and genotypic characteristics and the phylogenetic trees, strain WL0036(T) ought to be recognized as a novel species in genus Hyphomonas, for which the name Hyphomonas sediminis sp. nov. is proposed. The type strain is WL0036(T) (= MCCC 1K05843(T) = JCM 34658(T) = GDMCC 1.2413(T)).
引用
收藏
页码:1177 / 1185
页数:9
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