The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+T lymphocyte response

被引:19
作者
Dikhit, Manas Ranjan [1 ,2 ]
Das, Sushmita [3 ]
Mahantesh, Vijaya [2 ]
Kumar, Akhilesh [2 ]
Singh, Ashish Kumar [2 ]
Dehury, Budheswar [4 ]
Rout, Ajaya Kumar [5 ]
Ali, Vahab [6 ]
Sahoo, Ganesh Chandra [1 ]
Topno, Roshan Kamal [7 ]
Pandey, Krishna [8 ]
Das, V. N. R. [8 ]
Bimal, Sanjiva [2 ]
Das, Pradeep [9 ]
机构
[1] Rajendra Mem Res Inst Med Sci, BioMed Informat Div, Patna 800007, Bihar, India
[2] Rajendra Mem Res Inst Med Sci, Dept Immunol, Patna 800007, Bihar, India
[3] All India Inst Med Sci, Dept Microbiol, Patna 801507, Bihar, India
[4] ICMR Reg Med Res Ctr, BioMed Informat Ctr, Bhubaneswar 751023, Odisha, India
[5] ICAR Cent Inland Fisheries Res Inst, Biotechnol Lab, Kolkata 700120, W Bengal, India
[6] Rajendra Mem Res Inst Med Sci, Dept Clin Biochem, Patna 800007, Bihar, India
[7] Rajendra Mem Res Inst Med Sci, Dept Epidemiol, Patna 800007, Bihar, India
[8] Rajendra Mem Res Inst Med Sci, Dept Clin Med, Patna 800007, Bihar, India
[9] Rajendra Mem Res Inst Med Sci, Dept Mol Parasitol, Patna 800007, Bihar, India
来源
SCIENTIFIC REPORTS | 2018年 / 8卷
关键词
T-CELL EPITOPE; PROTEIN DISULFIDE-ISOMERASE; ANTIGENIC CTL EPITOPES; VISCERAL LEISHMANIASIS; IMMUNE-RESPONSE; GAMMA-INTERFERON; VACCINE; PREDICTION; IMMUNOGENICITY; PEPTIDES;
D O I
10.1038/s41598-018-32040-x
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
To explore new protective measure against visceral leishmaniasis, reverse vaccinology approach was employed to identify key immunogenic regions which can mediate long-term immunity. In-depth computational analysis revealed nine promiscuous epitopes which can possibly be presented by 46 human leukocyte antigen, thereby broadening the worldwide population up to 94.16%. This is of reasonable significance that most of the epitopes shared 100% sequence homology with other Leishmania species and could evoke a common pattern of protective immune response. Transporter associated with antigen processing binding affinity, molecular docking approach followed by dynamics simulation and human leukocyte antigen stabilization assay suggested that the best five optimal set of epitopes bind in between alpha 1 and alpha 2 binding groove with sufficient affinity and stability which allows the translocation of intact epitope to the cell surface. Fascinatingly, the human leukocyte antigen stabilization assay exhibited a modest correlation with the positive immunogenicity score predicted by class I pMHC immunogenicity predictor. A support for this notion came from ELISA and FACS analysis where the epitopes as a cocktail induced CD8+ IFN-gamma and Granzyme B levels significantly in treated visceral leishmaniasis subject which suggests the immunogenic ability of the selected epitopes.
引用
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页数:13
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共 70 条
  • [41] MULLER I, 1993, INFECT IMMUN, V61, P3730
  • [42] Prediction of T Cell Epitopes from Leishmania major Potentially Excreted/Secreted Proteins Inducing Granzyme B Production
    Naouar, Ikbel
    Boussoffara, Thouraya
    Chenik, Mehdi
    Gritli, Sami
    Ben Ahmed, Melika
    Hmida, Nabil Belhadj
    Bahi-Jaber, Narges
    Bardi, Rafika
    Gorgi, Yousr
    Ben Salah, Afif
    Louzir, Hechmi
    [J]. PLOS ONE, 2016, 11 (01):
  • [43] Combinatorial tetramer staining and mass cytometry analysis facilitate T-cell epitope mapping and characterization
    Newell, Evan W.
    Sigal, Natalia
    Nair, Nitya
    Kidd, Brian A.
    Greenberg, Harry B.
    Davis, Mark M.
    [J]. NATURE BIOTECHNOLOGY, 2013, 31 (07) : 623 - U81
  • [44] Secondary anchor polymorphism in the HA-1 minor histocompatibility antigen critically affects MHC stability and TCR recognition
    Nicholls, Sarah
    Piper, Karen P.
    Mohammed, Fiyaz
    Dafforn, Timothy R.
    Tenzer, Stefan
    Salim, Mahboob
    Mahendra, Premini
    Craddock, Charles
    van Endert, Peter
    Schild, Hansjoerg
    Cobbold, Mark
    Engelhard, Victor H.
    Moss, Paul A. H.
    Willcox, Benjamin E.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (10) : 3889 - 3894
  • [45] NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets
    Nielsen, Morten
    Andreatta, Massimo
    [J]. GENOME MEDICINE, 2016, 8
  • [46] In silico predicted epitopes from the COOH-terminal extension of cysteine proteinase B inducing distinct immune responses during Leishmania (Leishmania) amazonensis experimental murine infection
    Pereira, Bernardo A. S.
    Silva, Franklin S.
    Rebello, Karina M.
    Marin-Villa, Marcel
    Traub-Cseko, Yara M.
    Andrade, Thereza C. B.
    Bertho, Alvaro L.
    Caffarena, Ernesto R.
    Alves, Carlos R.
    [J]. BMC IMMUNOLOGY, 2011, 12
  • [47] Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors
    Peters, B
    Bulik, S
    Tampe, R
    van Endert, PM
    Holzhütter, HG
    [J]. JOURNAL OF IMMUNOLOGY, 2003, 171 (04) : 1741 - 1749
  • [48] More than one reason to rethink the use of peptides in vaccine design
    Purcell, Anthony W.
    McCluskey, James
    Rossjohn, Jamie
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2007, 6 (05) : 404 - 414
  • [49] A protective cocktail vaccine against murine cutaneous leishmaniasis with DNA encoding cysteine proteinases of Leishmania major
    Rafati, S
    Salmanian, AH
    Taheri, T
    Vafa, M
    Fasel, N
    [J]. VACCINE, 2001, 19 (25-26) : 3369 - 3375
  • [50] Pan-Specific Prediction of Peptide-MHC Class I Complex Stability, a Correlate of T Cell Immunogenicity
    Rasmussen, Michael
    Fenoy, Emilio
    Harndahl, Mikkel
    Kristensen, Anne Bregnballe
    Nielsen, Ida Kallehauge
    Nielsen, Morten
    Buus, Soren
    [J]. JOURNAL OF IMMUNOLOGY, 2016, 197 (04) : 1517 - 1524