The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+T lymphocyte response

被引:20
作者
Dikhit, Manas Ranjan [1 ,2 ]
Das, Sushmita [3 ]
Mahantesh, Vijaya [2 ]
Kumar, Akhilesh [2 ]
Singh, Ashish Kumar [2 ]
Dehury, Budheswar [4 ]
Rout, Ajaya Kumar [5 ]
Ali, Vahab [6 ]
Sahoo, Ganesh Chandra [1 ]
Topno, Roshan Kamal [7 ]
Pandey, Krishna [8 ]
Das, V. N. R. [8 ]
Bimal, Sanjiva [2 ]
Das, Pradeep [9 ]
机构
[1] Rajendra Mem Res Inst Med Sci, BioMed Informat Div, Patna 800007, Bihar, India
[2] Rajendra Mem Res Inst Med Sci, Dept Immunol, Patna 800007, Bihar, India
[3] All India Inst Med Sci, Dept Microbiol, Patna 801507, Bihar, India
[4] ICMR Reg Med Res Ctr, BioMed Informat Ctr, Bhubaneswar 751023, Odisha, India
[5] ICAR Cent Inland Fisheries Res Inst, Biotechnol Lab, Kolkata 700120, W Bengal, India
[6] Rajendra Mem Res Inst Med Sci, Dept Clin Biochem, Patna 800007, Bihar, India
[7] Rajendra Mem Res Inst Med Sci, Dept Epidemiol, Patna 800007, Bihar, India
[8] Rajendra Mem Res Inst Med Sci, Dept Clin Med, Patna 800007, Bihar, India
[9] Rajendra Mem Res Inst Med Sci, Dept Mol Parasitol, Patna 800007, Bihar, India
关键词
T-CELL EPITOPE; PROTEIN DISULFIDE-ISOMERASE; ANTIGENIC CTL EPITOPES; VISCERAL LEISHMANIASIS; IMMUNE-RESPONSE; GAMMA-INTERFERON; VACCINE; PREDICTION; IMMUNOGENICITY; PEPTIDES;
D O I
10.1038/s41598-018-32040-x
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
To explore new protective measure against visceral leishmaniasis, reverse vaccinology approach was employed to identify key immunogenic regions which can mediate long-term immunity. In-depth computational analysis revealed nine promiscuous epitopes which can possibly be presented by 46 human leukocyte antigen, thereby broadening the worldwide population up to 94.16%. This is of reasonable significance that most of the epitopes shared 100% sequence homology with other Leishmania species and could evoke a common pattern of protective immune response. Transporter associated with antigen processing binding affinity, molecular docking approach followed by dynamics simulation and human leukocyte antigen stabilization assay suggested that the best five optimal set of epitopes bind in between alpha 1 and alpha 2 binding groove with sufficient affinity and stability which allows the translocation of intact epitope to the cell surface. Fascinatingly, the human leukocyte antigen stabilization assay exhibited a modest correlation with the positive immunogenicity score predicted by class I pMHC immunogenicity predictor. A support for this notion came from ELISA and FACS analysis where the epitopes as a cocktail induced CD8+ IFN-gamma and Granzyme B levels significantly in treated visceral leishmaniasis subject which suggests the immunogenic ability of the selected epitopes.
引用
收藏
页数:13
相关论文
共 70 条
[1]   PREDICTION OF BINDING TO MHC CLASS-I MOLECULES [J].
ADAMS, HP ;
KOZIOL, JA .
JOURNAL OF IMMUNOLOGICAL METHODS, 1995, 185 (02) :181-190
[2]   Characterization of Leishmania donovani antigens encapsulated in liposomes that induce protective immunity in BALB/c mice [J].
Afrin, F ;
Rajesh, R ;
Anam, K ;
Gopinath, M ;
Pal, S ;
Ali, N .
INFECTION AND IMMUNITY, 2002, 70 (12) :6697-6706
[3]   Experimental validation of multi-epitope peptides including promising MHC class I- and II-restricted epitopes of four known Leishmania infantum proteins [J].
Agallou, Maria ;
Athanasiout, Evita ;
Koutsonit, Olga ;
Dotsika, Eleni ;
Karagouni, Evdokia .
FRONTIERS IN IMMUNOLOGY, 2014, 5
[4]   Leishmaniasis Worldwide and Global Estimates of Its Incidence [J].
Alvar, Jorge ;
Velez, Ivan D. ;
Bern, Caryn ;
Herrero, Merce ;
Desjeux, Philippe ;
Cano, Jorge ;
Jannin, Jean ;
den Boer, Margriet .
PLOS ONE, 2012, 7 (05)
[5]   ESSENTIAL DYNAMICS OF PROTEINS [J].
AMADEI, A ;
LINSSEN, ABM ;
BERENDSEN, HJC .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1993, 17 (04) :412-425
[6]   Immunization with Leishmania donovani protein disulfide isomerase DNA construct induces Th1 and Th17 dependent immune response and protection against experimental visceral leishmaniasis in Balb/c mice [J].
Amit, Ajay ;
Vijayamahantesh ;
Dikhit, Manas R. ;
Singh, Ashish Kumar ;
Kumar, Vikash ;
Suman, Shashi S. ;
Singh, Ashu ;
Kumar, Akhilesh ;
Thakur, Ajit Kumar ;
Das, Vidyanand Ravi ;
Das, Pradeep ;
Bimal, Sanjiva .
MOLECULAR IMMUNOLOGY, 2017, 82 :104-113
[7]   Immunomodulation mediated through Leishmania donovani protein disulfide isomerase by eliciting CD8+T-cell in cured visceral leishmaniasis subjects and identification of its possible HLA class-1 restricted T-cell epitopes [J].
Amit, Ajay ;
Dikhit, Manas R. ;
Mahantesh, Vijay ;
Chaudhary, Rajesh ;
Singh, Ashish Kumar ;
Singh, Ashu ;
Singh, Shubhankar Kumar ;
Das, V. N. R. ;
Pandey, Krishna ;
Ali, Vahab ;
Narayan, Shyam ;
Sahoo, Ganesh C. ;
Das, Pradeep ;
Bimal, Sanjiva .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2017, 35 (01) :128-140
[8]   Identification of an HLA-A*0201-restricted T-Cell epitope on the MPT51 protein, a major secreted protein derived from Mycobacterium tuberculosis, by MPT51 overlapping peptide screening [J].
Aoshi, Taiki ;
Nagata, Toshi ;
Suzuki, Mina ;
Uchijima, Masato ;
Hashimoto, Dai ;
Rafiei, Alireza ;
Suda, Takafumi ;
Chida, Kingo ;
Koide, Yukio .
INFECTION AND IMMUNITY, 2008, 76 (04) :1565-1571
[9]   HLA class I-restricted T cell epitopes of the kinetoplastid membrane protein-11 presented by Leishmania donovani-infected human macrophages [J].
Basu, Rajatava ;
Roy, Syamal ;
Walden, Peter .
JOURNAL OF INFECTIOUS DISEASES, 2007, 195 (09) :1373-1380
[10]   CD8+ T cells are required for primary immunity in C57BL/6 mice following low-dose, intradermal challenge with Leishmania major [J].
Belkaid, Y ;
Von Stebut, E ;
Mendez, S ;
Lira, R ;
Caler, E ;
Bertholet, S ;
Udey, MC ;
Sacks, D .
JOURNAL OF IMMUNOLOGY, 2002, 168 (08) :3992-4000