Connecting genomic patterns of local adaptation and niche suitability in teosintes

被引:39
作者
Aguirre-Liguori, J. A. [1 ]
Tenaillon, M. I. [2 ]
Vazquez-Lobo, A. [3 ]
Gaut, B. S. [4 ]
Jaramillo-Correa, J. P. [1 ]
Montes-Hernandez, S. [5 ]
Souza, V. [1 ]
Eguiarte, L. E. [1 ]
机构
[1] Univ Nacl Autonoma Mexico, Inst Ecol, Dept Ecol Evolut, Mexico City, DF, Mexico
[2] Univ Paris Saclay, Univ Paris Sud, Genet Quantitat & Evolut Le Moulon, INRA,CNRS,AgroParisTech, Gif Sur Yvette, France
[3] Univ Autonoma Estado Morelos, Ctr Invest Biodiversidad & Conservac, Cuernavaca, Morelos, Mexico
[4] UC Irvine, Dept Ecol & Evolutionary Biol, Irvine, CA USA
[5] Inst Nacl Invest Forestales Agr & Pecuarias, Campo Expt Bajio, Guanajuato, Mexico
关键词
central abundance hypothesis; conditional neutrality; ecological speciation; local adaptation; niche centroid; Zea mays; GENETIC-VARIATION; ABUNDANCE DISTRIBUTIONS; SELECTION; RANGE; CLIMATE; EVOLUTION; LIMITS; WILD; POPULATIONS; DIVERGENCE;
D O I
10.1111/mec.14203
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The central abundance hypothesis predicts that local adaptation is a function of the distance to the centre of a species' geographic range. To test this hypothesis, we gathered genomic diversity data from 49 populations, 646 individuals and 33,464 SNPs of two wild relatives of maize, the teosintes Zea mays ssp. parviglumis and Zea. mays. ssp. mexicana. We examined the association between the distance to their climatic and geographic centroids and the enrichment of SNPs bearing signals of adaptation. We identified candidate adaptive SNPs in each population by combining neutrality tests and cline analyses. By applying linear regression models, we found that the number of candidate SNPs is positively associated with niche suitability, while genetic diversity is reduced at the limits of the geographic distribution. Our results suggest that overall, populations located at the limit of the species' niches are adapting locally. We argue that local adaptation to this limit could initiate ecological speciation processes and facilitate adaptation to global change.
引用
收藏
页码:4226 / 4240
页数:15
相关论文
共 97 条
[1]   Ascertainment Biases in SNP Chips Affect Measures of Population Divergence [J].
Albrechtsen, Anders ;
Nielsen, Finn Cilius ;
Nielsen, Rasmus .
MOLECULAR BIOLOGY AND EVOLUTION, 2010, 27 (11) :2534-2547
[2]   Geographical patterns of adaptation within a species' range: interactions between drift and gene flow [J].
Alleaume-Benharira, M ;
Pen, IR ;
Ronce, O .
JOURNAL OF EVOLUTIONARY BIOLOGY, 2006, 19 (01) :203-215
[3]   Genetic trade-offs and conditional neutrality contribute to local adaptation [J].
Anderson, Jill T. ;
Lee, Cheng-Ruei ;
Rushworth, Catherine A. ;
Colautti, Robert I. ;
Mitchell-Olds, Thomas .
MOLECULAR ECOLOGY, 2013, 22 (03) :699-708
[4]   Evolutionary genetics of plant adaptation [J].
Anderson, Jill T. ;
Willis, John H. ;
Mitchell-Olds, Thomas .
TRENDS IN GENETICS, 2011, 27 (07) :258-266
[5]  
[Anonymous], 1978, An Introduction to Population Ecology
[6]  
[Anonymous], GENE FLOW MAIZE VARI
[7]   Adaptation from standing genetic variation [J].
Barrett, Rowan D. H. ;
Schluter, Dolph .
TRENDS IN ECOLOGY & EVOLUTION, 2008, 23 (01) :38-44
[8]   Identifying adaptive genetic divergence among populations from genome scans [J].
Beaumont, MA ;
Balding, DJ .
MOLECULAR ECOLOGY, 2004, 13 (04) :969-980
[9]   Evaluating loci for use in the genetic analysis of population structure [J].
Beaumont, MA ;
Nichols, RA .
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1996, 263 (1377) :1619-1626
[10]   DISENTANGLING THE EFFECTS OF GEOGRAPHIC AND ECOLOGICAL ISOLATION ON GENETIC DIFFERENTIATION [J].
Bradburd, Gideon S. ;
Ralph, Peter L. ;
Coop, Graham M. .
EVOLUTION, 2013, 67 (11) :3258-3273