Centralizing data to unlock whole-cell models

被引:1
作者
Chew, Yin Hoon [1 ]
Karr, Jonathan R. [1 ]
机构
[1] Icahn Sch Med Mt Sinai, Dept Genet & Genom Sci, 1425 Madison Ave, New York, NY 10029 USA
基金
美国国家卫生研究院;
关键词
Whole-cell model; Integrative model; Data integration; Data warehouse; Computational biology; Systems biology; SUBCELLULAR-LOCALIZATION; STANDARDS; RESOURCE; SOFTWARE; FORMAT; SIMULATION; CHALLENGES; GUIDELINES; DISCOVERY; LANGUAGE;
D O I
10.1016/j.coisb.2021.06.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Despite substantial potential to transform bioscience, medicine, and bioengineering, whole-cell models remain elusive. One of the biggest challenges to whole-cell models is assembling the large and diverse array of data needed to model an entire cell. Thanks to rapid advances in experimentation, much of the necessary data is becoming available. Furthermore, investigators are increasingly sharing their data because of growing recognition of the importance of research that is transparent and reproducible to others. However, the scattered organization of this data continues to hamper modeling. Toward more predictive models, we highlight the challenges to assembling the data needed for whole-cell modeling and outline how we can overcome these challenges by working together to build a central data warehouse.
引用
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页数:9
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