Identification of prognostic immune-related genes in the tumor microenvironment of endometrial cancer

被引:70
作者
Chen, Peigen [1 ]
Yang, Yuebo [1 ]
Zhang, Yu [1 ]
Jiang, Senwei [1 ]
Li, Xiaomao [1 ]
Wan, Jing [1 ]
机构
[1] Sun Yat Sen Univ, Dept Gynecol, Affiliated Hosp 3, Guangzhou, Guangdong, Peoples R China
来源
AGING-US | 2020年 / 12卷 / 04期
关键词
endometrial cancer; tumor microenvironment; prognosis; immune score; TCGA; MESSENGER-RNA EXPRESSION; REGULATORY T-CELLS; COMPREHENSIVE ANALYSIS; CATHEPSIN-W; MACROPHAGE; MODELS; STATISTICS; CYTOSCAPE; CARCINOMA;
D O I
10.18632/aging.102817
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Endometrial cancer (EC) is one of the most common gynecologic malignancies. To identify potential prognostic biomarkers for EC, we analyzed the relationship between the EC tumor microenvironment and gene expression profiles. Using the ESTIMATE R tool, we found that immune and stromal scores correlated with clinical data and the prognosis of EC patients. Based on the immune and stromal scores, 387 intersection differentially expressed genes were identified. Eight immune-related genes were then identified using two machine learning algorithms. Functional enrichment analysis revealed that these genes were mainly associated with T cell activation and response. Kaplan-Meier survival analysis showed that expression of TMEM150B, CACNA2D2, TRPM5, NOL4, CTSW, and SIGLEC1 significantly correlated with overall survival times of EC patients. In addition, using the TIMER algorithm, we found that expression of TMEM150B, SIGLEC1, and CTSW correlated positively with the tumor infiltration levels of B cells, CD8+ T cells, CD4+ T cells, macrophages, and dendritic cells. These findings indicate that the composition of the tumor microenvironment affects the clinical outcomes of EC patients, and suggests that it may provide a basis for development of novel prognostic biomarkers and immunotherapies for EC patients.
引用
收藏
页码:3371 / 3387
页数:17
相关论文
共 53 条
[1]  
[Anonymous], 2018, R LANG ENV STAT COMP
[2]   An automated method for finding molecular complexes in large protein interaction networks [J].
Bader, GD ;
Hogue, CW .
BMC BIOINFORMATICS, 2003, 4 (1)
[3]   ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks [J].
Bindea, Gabriela ;
Mlecnik, Bernhard ;
Hackl, Hubert ;
Charoentong, Pornpimol ;
Tosolini, Marie ;
Kirilovsky, Amos ;
Fridman, Wolf-Herman ;
Pages, Franck ;
Trajanoski, Zlatko ;
Galon, Jerome .
BIOINFORMATICS, 2009, 25 (08) :1091-1093
[4]   LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq [J].
Bitton, Danny A. ;
Rallis, Charalampos ;
Jeffares, Daniel C. ;
Smith, Graeme C. ;
Chen, Yuan Y. C. ;
Codlin, Sandra ;
Marguerat, Samuel ;
Baehler, Juerg .
GENOME RESEARCH, 2014, 24 (07) :1169-1179
[5]   2 PATHOGENETIC TYPES OF ENDOMETRIAL CARCINOMA [J].
BOKHMAN, JV .
GYNECOLOGIC ONCOLOGY, 1983, 15 (01) :10-17
[6]   Random forests [J].
Breiman, L .
MACHINE LEARNING, 2001, 45 (01) :5-32
[7]   Deciphering Macrophage and Monocyte Code to Stratify Human Breast Cancer Patients [J].
Bronte, Vincenzo .
CANCER CELL, 2019, 35 (04) :538-539
[8]   Clinical Significance of Regulatory T Cells and CD8+ Effector Populations in Patients With Human Endometrial Carcinoma [J].
Chang, Wen Chun ;
Li, Chao-Hsu ;
Huang, Su Cheng ;
Chang, Daw-Yuan ;
Chou, Li-Yun ;
Sheu, Bor-Ching .
CANCER, 2010, 116 (24) :5777-5788
[9]   Cancer Statistics in China, 2015 [J].
Chen, Wanqing ;
Zheng, Rongshou ;
Baade, Peter D. ;
Zhang, Siwei ;
Zeng, Hongmei ;
Bray, Freddie ;
Jemal, Ahmedin ;
Yu, Xue Qin ;
He, Jie .
CA-A CANCER JOURNAL FOR CLINICIANS, 2016, 66 (02) :115-132
[10]   The Tumor Microenvironment Strongly Impacts Master Transcriptional Regulators and Gene Expression Class of Glioblastoma [J].
Cooper, Lee A. D. ;
Gutman, David A. ;
Chisolm, Candace ;
Appin, Christina ;
Kong, Jun ;
Rong, Yuan ;
Kurc, Tahsin ;
Van Meir, Erwin G. ;
Saltz, Joel H. ;
Moreno, Carlos S. ;
Brat, Daniel J. .
AMERICAN JOURNAL OF PATHOLOGY, 2012, 180 (05) :2108-2119