Five factors (enzyme concentration, substrate concentration, pH, incubation temperature, and incubation time) were initially screened for the conversion of isoflavone glucosides to aglycones in soy germ flour. The incubation temperature/time most significantly affected aglycone yield; subsequently, a full 5 (35, 40, 45, 50, and 55 degrees C) x 6 (1, 2, 3, 4, 5, and 6 h) factorial design and response surface methodology were employed to attain an optimal incubation time/temperature condition. The optimum condition producing soy germ flour with a high concentration of daidzein, glycitein, and genistein was as follows: soy germ flour:deionized water (1:5, w/v), beta-glucosidase at 1 unit/g of soy germ flour, pH 5, and incubation temperature/time of 45 degrees C/5 h. Under this optimal condition, most isoflavone glucosides were converted to aglycones with daidzein, glycitein, and genistein of >= 15.4, >= 6.16, and >= 4.147 mu mol/g, respectively. In contrast, the control soy germ flour contained 13.82 mu mol/g daidzin, 7.11 mu mol/g glycitin, 4.40 mu mol/g genistin, 1.56 mu mol/g daidzein, 0.52 mu mol/g glycitein, and 0.46 mu mol/g genistein.