Draft Genome Sequence of Candida railenensis Strain CLIB 1423, Isolated from Papaya Fruit in French Guiana

被引：1

作者：

Devillers, Hugo ^{[1
]}

Grondin, Cecile ^{[1
]}

Thiriet, Angele ^{[1
]}

Legras, Jean-Luc ^{[1
]}

机构：

[1] Univ Montpellier, Inst Agro, SPO, INRAE, Montpellier, France

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2022年 / 11卷 / 12期

关键词：

SP; NOV; KURTZMANIELLA; F.A;

D O I：

10.1128/mra.00554-22

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Here, we report the draft genome sequence and annotation of the yeast Candida railenensis strain CLIB 1423. The assembly consists of 57 nuclear scaffolds and 1 complete mitochondrial chromosome, for a total of 13.8 Mb (N-50, 0.54 Mb; L-50, 9). The annotation contains 6,013 coding DNA sequences (CDSs) (BUSCO completeness, 99.6%). Here, we report the draft genome sequence and annotation of the yeast Candida railenensis strain CLIB 1423. The assembly consists of 57 nuclear scaffolds and 1 complete mitochondrial chromosome, for a total of 13.8 Mb (N-50, 0.54 Mb; L-50, 9). The annotation contains 6,013 coding DNA sequences (CDSs) (BUSCO completeness, 99.6%).

引用

页数：2

共 11 条

[1] UniProt: the universal protein knowledgebase in 2021 [J].

Bateman, Alex ;

Martin, Maria-Jesus ;

Orchard, Sandra ;

Magrane, Michele ;

Agivetova, Rahat ;

Ahmad, Shadab ;

Alpi, Emanuele ;

Bowler-Barnett, Emily H. ;

Britto, Ramona ;

Bursteinas, Borisas ;

Bye-A-Jee, Hema ;

Coetzee, Ray ;

Cukura, Austra ;

Da Silva, Alan ;

Denny, Paul ;

Dogan, Tunca ;

Ebenezer, ThankGod ;

Fan, Jun ;

Castro, Leyla Garcia ;

Garmiri, Penelope ;

Georghiou, George ;

Gonzales, Leonardo ;

Hatton-Ellis, Emma ;

Hussein, Abdulrahman ;

Ignatchenko, Alexandr ;

Insana, Giuseppe ;

Ishtiaq, Rizwan ;

Jokinen, Petteri ;

Joshi, Vishal ;

Jyothi, Dushyanth ;

Lock, Antonia ;

Lopez, Rodrigo ;

Luciani, Aurelien ;

Luo, Jie ;

Lussi, Yvonne ;

Mac-Dougall, Alistair ;

Madeira, Fabio ;

Mahmoudy, Mahdi ;

Menchi, Manuela ;

Mishra, Alok ;

Moulang, Katie ;

Nightingale, Andrew ;

Oliveira, Carla Susana ;

Pundir, Sangya ;

Qi, Guoying ;

Raj, Shriya ;

Rice, Daniel ;

Lopez, Milagros Rodriguez ;

Saidi, Rabie ;

Sampson, Joseph .

NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D480-D489

[2] The InterPro protein families and domains database: 20 years on [J].

Blum, Matthias ;

Chang, Hsin-Yu ;

Chuguransky, Sara ;

Grego, Tiago ;

Kandasaamy, Swaathi ;

Mitchell, Alex ;

Nuka, Gift ;

Paysan-Lafosse, Typhaine ;

Qureshi, Matloob ;

Raj, Shriya ;

Richardson, Lorna ;

Salazar, Gustavo A. ;

Williams, Lowri ;

Bork, Peer ;

Bridge, Alan ;

Gough, Julian ;

Haft, Daniel H. ;

Letunic, Ivica ;

Marchler-Bauer, Aron ;

Mi, Huaiyu ;

Natale, Darren A. ;

Necci, Marco ;

Orengo, Christine A. ;

Pandurangan, Arun P. ;

Rivoire, Catherine ;

Sigrist, Christian J. A. ;

Sillitoe, Ian ;

Thanki, Narmada ;

Thomas, Paul D. ;

Tosatto, Silvio C. E. ;

Wu, Cathy H. ;

Bateman, Alex ;

Finn, Robert D. .

NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D344-D354

[3] BLAST plus : architecture and applications [J].

Camacho, Christiam ;

Coulouris, George ;

Avagyan, Vahram ;

Ma, Ning ;

Papadopoulos, Jason ;

Bealer, Kevin ;

Madden, Thomas L. .

BMC BIOINFORMATICS, 2009, 10

[4]

Chan PP, 2019, METHODS MOL BIOL, V1962, P1, DOI 10.1007/978-1-4939-9173-0_1

[5] fastp: an ultra-fast all-in-one FASTQ preprocessor [J].

Chen, Shifu ;

Zhou, Yanqing ;

Chen, Yaru ;

Gu, Jia .

BIOINFORMATICS, 2018, 34 (17) :884-890

[6] Large biodiversity of yeasts in French Guiana and the description of Suhomyces coccinellae f.a. sp. nov. and Suhomyces faveliae f.a. sp. nov. [J].

Jacques, Noemie ;

Casaregola, Serge .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (06) :1634-1649

[7] A novel hybrid gene prediction method employing protein multiple sequence alignments [J].

Keller, Oliver ;

Kollmar, Martin ;

Stanke, Mario ;

Waack, Stephan .

BIOINFORMATICS, 2011, 27 (06) :757-763

[8] Kurtzmaniella gen. nov and description of the heterothallic, haplontic yeast species Kurtzmaniella cleridarum sp nov., the teleornorph of Candida cleridarum [J].

Lachance, Marc-Andre ;

Starmer, William T. .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :520-524

[9] Kurtzmaniella hittingeri f.a., sp. nov., isolated from rotting wood and fruits, and transfer of three Candida species to the genus Kurtzmaniella as new combinations [J].

Lopes, Mariana R. ;

Santos, Ana Raquel O. ;

Moreira, Juliana D. ;

Santa-Brigida, Rosengela ;

Martins, Marlucia B. ;

Pinto, Fernanda O. ;

Valente, Patricia ;

Morais, Paula B. ;

Jacques, Noemie ;

Grondin, Cecile ;

Casaregoa, Serge ;

Lachance, Marc-Andre ;

Rosa, Carlos A. .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (05) :1504-1508

[10]

Prjibelski Andrey, 2020, Curr Protoc Bioinformatics, V70, pe102, DOI 10.1002/cpbi.102

← 1 2 →