Independent gradient model based on Hirshfeld partition: A new method for visual study of interactions in chemical systems

被引:2072
作者
Lu, Tian [1 ]
Chen, Qinxue [1 ]
机构
[1] Beijing Kein Res Ctr Nat Sci, Beijing 100024, Peoples R China
关键词
electron density; Hirshfeld; hydrogen bond; independent gradient model; interaction region indicator; Multiwfn; noncovalent interaction; pi-pi stacking; van der Waals interaction; weak interaction; ALL-CARBOATOMIC RING; ELECTRONIC-STRUCTURE; NONCOVALENT INTERACTION; WAVE-FUNCTION; AB-INITIO; DENSITY; LOCALIZATION; MOLECULES; ATOM; ADSORPTION;
D O I
10.1002/jcc.26812
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The powerful independent gradient model (IGM) method has been increasingly popular in visual analysis of intramolecular and intermolecular interactions in recent years. However, we frequently observed that there is an evident shortcoming of IGM map in graphically studying weak interactions, that is its isosurfaces are usually too bulgy; in these cases, not only the graphical effect is poor, but also the color on some areas on the isosurfaces is inappropriate and may lead to erroneous analysis conclusions. In addition, the IGM method was originally proposed based on promolecular density, which is quite crude and does not take actual electronic structure into account. In this article, we propose an improvement version of IGM, namely IGM based on Hirshfeld partition of molecular density (IGMH), which replaces the free-state atomic densities involved in the IGM method with the atomic densities derived by Hirshfeld partition of actual molecular electron density. This change makes IGM have more rigorous physical background. A large number of application examples in this article, including molecular and periodic systems, weak and chemical bond interactions, fully demonstrate the important value of IGMH in intuitively understanding interactions in chemical systems. Comparisons also showed that the IGMH usually has markedly better graphical effect than IGM and overcomes known problems in IGM. Currently IGMH analysis has been supported in our wavefunction analysis code Multiwfn (). We hope that IGMH will become a new useful method among chemists for exploring interactions in wide variety of chemical systems.
引用
收藏
页码:539 / 555
页数:17
相关论文
共 85 条
[1]   Toward reliable density functional methods without adjustable parameters: The PBE0 model [J].
Adamo, C ;
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (13) :6158-6170
[2]  
Bader R.F.W., 1994, International Series of Monographs on Chemistry
[3]   GFN2-xTB-An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions [J].
Bannwarth, Christoph ;
Ehlert, Sebastian ;
Grimme, Stefan .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2019, 15 (03) :1652-1671
[4]   A MULTICENTER NUMERICAL-INTEGRATION SCHEME FOR POLYATOMIC-MOLECULES [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1988, 88 (04) :2547-2553
[5]   A SIMPLE MEASURE OF ELECTRON LOCALIZATION IN ATOMIC AND MOLECULAR-SYSTEMS [J].
BECKE, AD ;
EDGECOMBE, KE .
JOURNAL OF CHEMICAL PHYSICS, 1990, 92 (09) :5397-5403
[6]   A theory of water and ionic solution, with particular reference to hydrogen and hydroxyl ions [J].
Bernal, JD ;
Fowler, RH .
JOURNAL OF CHEMICAL PHYSICS, 1933, 1 (08) :515-548
[7]   Impact of Functional Group Methylation on the Disaggregation Trend of Asphaltene: A Combined Experimental and Theoretical Study [J].
Bian, He ;
Kan, Aiting ;
Yao, Zhilin ;
Duan, Zunbin ;
Zhang, Huiming ;
Zhang, Shiguo ;
Zhu, Lijun ;
Xia, Daohong .
JOURNAL OF PHYSICAL CHEMISTRY C, 2019, 123 (49) :29543-29555
[8]   Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies [J].
Bulat, Felipe A. ;
Toro-Labbe, Alejandro ;
Brinck, Tore ;
Murray, Jane S. ;
Politzer, Peter .
JOURNAL OF MOLECULAR MODELING, 2010, 16 (11) :1679-1691
[9]   The Halogen Bond [J].
Cavallo, Gabriella ;
Metrangolo, Pierangelo ;
Milani, Roberto ;
Pilati, Tullio ;
Priimagi, Arri ;
Resnati, Giuseppe ;
Terraneo, Giancarlo .
CHEMICAL REVIEWS, 2016, 116 (04) :2478-2601
[10]   Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections [J].
Chai, Jeng-Da ;
Head-Gordon, Martin .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2008, 10 (44) :6615-6620