Classifying and analyzing small-angle scattering data using weighted k nearest neighbors machine learning techniques

被引:34
作者
Archibald, Richard K. [1 ]
Doucet, Mathieu [2 ]
Johnston, Travis [1 ]
Young, Steven R. [1 ]
Yang, Erika [1 ]
Heller, William T. [2 ]
机构
[1] Oak Ridge Natl Lab, Comp Sci & Math Div, POB 2009, Oak Ridge, TN 37831 USA
[2] Oak Ridge Natl Lab, Neutron Scattering Div, POB 2009, Oak Ridge, TN 37831 USA
基金
欧盟地平线“2020”;
关键词
small-angle scattering data; machine learning; modeling; SasView; COMPUTER; CALIBRATION;
D O I
10.1107/S1600576720000552
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
A consistent challenge for both new and expert practitioners of small-angle scattering (SAS) lies in determining how to analyze the data, given the limited information content of said data and the large number of models that can be employed. Machine learning (ML) methods are powerful tools for classifying data that have found diverse applications in many fields of science. Here, ML methods are applied to the problem of classifying SAS data for the most appropriate model to use for data analysis. The approach employed is built around the method of weighted k nearest neighbors (wKNN), and utilizes a subset of the models implemented in the SasView package (https://www. sasview.org/) for generating a well defined set of training and testing data. The prediction rate of the wKNN method implemented here using a subset of SasView models is reasonably good for many of the models, but has difficulty with others, notably those based on spherical structures. A novel expansion of the wKNN method was also developed, which uses Gaussian processes to produce local surrogate models for the classification, and this significantly improves the classification accuracy. Further, by integrating a stochastic gradient descent method during post-processing, it is possible to leverage the local surrogate model both to classify the SAS data with high accuracy and to predict the structural parameters that best describe the data. The linking of data classification and model fitting has the potential to facilitate the translation of measured data into results for both novice and expert practitioners of SAS.
引用
收藏
页码:326 / 334
页数:9
相关论文
共 29 条
[1]   Machine learning classification based on k-Nearest Neighbors for PolSAR data [J].
Ferreira, Jodavid A. ;
Rodrigues, Anny K. G. ;
Ospina, Raydonal ;
Gomez, Luis .
ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS, 2024, 96 (01)
[2]   Insights into distorted lamellar phases with small-angle scattering and machine learning [J].
Tung, Chi-Huan ;
Ding, Lijie ;
Huang, Guan-Rong ;
Porcar, Lionel ;
Shinohara, Yuya ;
Sumpter, Bobby G. ;
Do, Changwoo ;
Chen, Wei-Ren .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2025, 58 :523-534
[3]   Using Small-Angle Scattering Data and Parametric Machine Learning to Optimize Force Field Parameters for Intrinsically Disordered Proteins [J].
Demerdash, Omar ;
Shrestha, Utsab R. ;
Petridis, Loukas ;
Smith, Jeremy C. ;
Mitchell, Julie C. ;
Ramanathan, Arvind .
FRONTIERS IN MOLECULAR BIOSCIENCES, 2019, 6
[4]   Automated selection of nanoparticle models for small-angle X-ray scattering data analysis using machine learning [J].
Monge, Nicolas ;
Deschamps, Alexis ;
Amini, Massih-Reza .
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2024, 80 :202-212
[5]   Nonlinearity Mitigation Using a Machine Learning Detector Based on k-Nearest Neighbors [J].
Wang, Danshi ;
Zhang, Min ;
Fu, Meixia ;
Cai, Zhongle ;
Li, Ze ;
Han, Huanhuan ;
Cui, Yue ;
Luo, Bin .
IEEE PHOTONICS TECHNOLOGY LETTERS, 2016, 28 (19) :2102-2105
[6]   Accelerating small-angle scattering experiments with simulation-based machine learning [J].
Kanazawa, Takuya ;
Asahara, Akinori ;
Morita, Hidekazu .
JOURNAL OF PHYSICS-MATERIALS, 2020, 3 (01)
[7]   Analyzing angle crashes at unsignalized intersections using machine learning techniques [J].
Abdel-Aty, Mohamed ;
Haleem, Kirolos .
ACCIDENT ANALYSIS AND PREVENTION, 2011, 43 (01) :461-470
[8]   Small Angle Scattering Data Analysis Assisted by Machine Learning Methods [J].
Do, Changwoo ;
Chen, Wei-Ren ;
Lee, Sangkeun .
MRS ADVANCES, 2020, 5 (29-30) :1577-1584
[9]   Small Angle Scattering Data Analysis Assisted by Machine Learning Methods [J].
Changwoo Do ;
Wei-Ren Chen ;
Sangkeun Lee .
MRS Advances, 2020, 5 :1577-1584
[10]   Prediction of Heart Disease using Forest Algorithm over K-nearest neighbors using Machine Learning with Improved Accuracy [J].
Raj, K. N. S. Shanmukha ;
Thinakaran, K. .
CARDIOMETRY, 2022, (25) :1500-1506