In Silico Evidence That Protein Unfolding is a Precursor of Protein Aggregation

被引:17
作者
Bianco, Valentino [1 ]
Franzese, Giancarlo [2 ,3 ]
Coluzza, Ivan [4 ,5 ]
机构
[1] Univ Complutense Madrid, Fac Chem, Dept Chem Phys, Plaza Ciencias,Ciudad Univ, E-28040 Madrid, Spain
[2] Univ Barcelona, Fac Fis, Seccio Fis Estadist & Interdisciplinaria, Dept Fis Mat Condensada, Marti i Franques 1, E-08028 Barcelona, Spain
[3] Univ Barcelona, Inst Nanosci & Nanotechnol IN2UB, Marti i Franques 1, E-08028 Barcelona, Spain
[4] CIC biomaGUNE, Paseo Miramon 182, San Sebastian 20014, Spain
[5] Basque Fdn Sci, Ikerbasque, Bilbao 48013, Spain
基金
奥地利科学基金会;
关键词
aqueous environments; computational chemistry; hydration shell; protein aggregation; protein folding; HYDROPHOBIC HYDRATION; LATTICE MODELS; WATER; STABILITY; STATE; COLD; INTERMEDIATE; SIMULATIONS; TEMPERATURE; DYNAMICS;
D O I
10.1002/cphc.201900904
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present a computational study on the folding and aggregation of proteins in an aqueous environment, as a function of its concentration. We show how the increase of the concentration of individual protein species can induce a partial unfolding of the native conformation without the occurrence of aggregates. A further increment of the protein concentration results in the complete loss of the folded structures and induces the formation of protein aggregates. We discuss the effect of the protein interface on the water fluctuations in the protein hydration shell and their relevance in the protein-protein interaction.
引用
收藏
页码:377 / 384
页数:8
相关论文
共 85 条
[1]   A Simple Lattice Model That Captures Protein Folding, Aggregation and Amyloid Formation [J].
Abeln, Sanne ;
Vendruscolo, Michele ;
Dobson, Christopher M. ;
Frenkel, Daan .
PLOS ONE, 2014, 9 (01)
[2]   Protein aggregation diseases: pathogenicity and therapeutic perspectives [J].
Aguzzi, Adriano ;
O'Connor, Tracy .
NATURE REVIEWS DRUG DISCOVERY, 2010, 9 (03) :237-248
[3]   Water in Amyloidogenic Intrinsically Disordered Proteins: Interplay of Conformational Preference and Amyloid Aggregation [J].
Arya, Shruti ;
Mukhopadhyay, Samrat .
BIOPHYSICAL JOURNAL, 2016, 110 (03) :398A-398A
[4]   Limiting the valence: advancements and new perspectives on patchy colloids, soft functionalized nanoparticles and biomolecules [J].
Bianchi, Emanuela ;
Capone, Barbara ;
Coluzza, Ivan ;
Rovigatti, Lorenzo ;
van Oostrum, Peter D. J. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2017, 19 (30) :19847-19868
[5]   Proteins are Solitary! Pathways of Protein Folding and Aggregation in Protein Mixtures [J].
Bianco, Valentino ;
Alonso-Navarro, Miren ;
Di Silvio, Desire ;
Moya, Sergio ;
Cortajarena, Aitziber L. ;
Coluzza, Ivan .
JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2019, 10 (17) :4800-4804
[6]   Hydrogen bond correlated percolation in a supercooled water monolayer as a hallmark of the critical region [J].
Bianco, Valentino ;
Franzese, Giancarlo .
JOURNAL OF MOLECULAR LIQUIDS, 2019, 285 :727-739
[7]   How the stability of a folded protein depends on interfacial water properties and residue-residue interactions [J].
Bianco, Valentino ;
Pages-Gelabert, Neus ;
Coluzza, Ivan ;
Franzese, Giancarlo .
JOURNAL OF MOLECULAR LIQUIDS, 2017, 245 :129-139
[8]   Role of Water in the Selection of Stable Proteins at Ambient and Extreme Thermodynamic Conditions [J].
Bianco, Valentino ;
Franzese, Giancarlo ;
Dellago, Christoph ;
Coluzza, Ivan .
PHYSICAL REVIEW X, 2017, 7 (02)
[9]   Contribution of Water to Pressure and Cold Denaturation of Proteins [J].
Bianco, Valentino ;
Franzese, Giancarlo .
PHYSICAL REVIEW LETTERS, 2015, 115 (10)
[10]   Critical behavior of a water monolayer under hydrophobic confinement [J].
Bianco, Valentino ;
Franzese, Giancarlo .
SCIENTIFIC REPORTS, 2014, 4