Identifying Factors Controlling Protein Release from Combinatorial Biomaterial Libraries via Hybrid Data Mining Methods

被引:20
作者
Li, Xue [1 ,2 ]
Petersen, Latrisha [1 ,3 ]
Broderick, Scott [1 ,2 ]
Narasimhan, Balaji [1 ,3 ]
Rajan, Krishna [1 ,2 ]
机构
[1] Iowa State Univ, Inst Combinatorial Discovery, Ames, IA 50011 USA
[2] Iowa State Univ, Dept Mat Sci & Engn, Ames, IA 50011 USA
[3] Iowa State Univ, Dept Chem & Biol Engn, Ames, IA 50011 USA
基金
美国国家科学基金会;
关键词
polyanhydrides; degradable biomaterials; drug delivery; vaccine delivery; drug release kinetics; CONTROLLED DRUG-DELIVERY; AIDED DECISION SYSTEMS; NEURAL-NETWORK; BIOERODIBLE POLYANHYDRIDES; GENETIC ALGORITHMS; MODEL; MICROSPHERES; EROSION; DEVICES; STABILIZATION;
D O I
10.1021/co100019d
中图分类号
O69 [应用化学];
学科分类号
081704 ;
摘要
Polyanhydrides are a class of degradable biomaterials that have shown much promise for applications in drug and vaccine delivery. Their properties can be tailored for controlled drug release, drug/protein stability, and immune regulation (adjuvant effect). Identifying the relationship between the molecular structures of the polymers and the drug release kinetics profiles would help understand the release mechanism and aid in the accurate prediction of drug release and the rational design of polymer-based drug carrier systems. The molecular structure descriptors that had the most impact on the release kinetics were identified using a prediction/optimization data mining approach. Using this new approach for modeling nonlinear release kinetics behavior, we determined that the descriptors which had the greatest effect on the release kinetics were the number of backbone -COO- nonconjugated bonds, the number of aromatic rings, and the number of -CH2- bonds.
引用
收藏
页码:50 / 58
页数:9
相关论文
共 44 条
[1]   Pharmacophore Modeling, Quantitative Structure-Activity Relationship Analysis, and Shape-Complemented in Silico Screening Allow Access to Novel Influenza Neuraminidase Inhibitors [J].
Abu Hammad, Areej M. ;
Taha, Mutasem O. .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2009, 49 (04) :978-996
[2]   High Throughput Cell-Based Screening of Biodegradable Polyanhydride Libraries [J].
Adler, Andrew F. ;
Petersen, Latrisha K. ;
Wilson, Jennifer H. ;
Torres, Maria P. ;
Thorstenson, Jon B. ;
Gardner, Stuart W. ;
Mallapragada, Surya K. ;
Wannemuehler, Michael J. ;
Narasimhan, Balaji .
COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2009, 12 (07) :634-645
[3]   NEW LOOK AT STATISTICAL-MODEL IDENTIFICATION [J].
AKAIKE, H .
IEEE TRANSACTIONS ON AUTOMATIC CONTROL, 1974, AC19 (06) :716-723
[4]   Self-organization of spiking neural network that generates autonomous behavior in a real mobile robot [J].
Alnajjar, Fady ;
Murase, Kazuyuki .
INTERNATIONAL JOURNAL OF NEURAL SYSTEMS, 2006, 16 (04) :229-239
[5]   A theoretical model of erosion and macromolecular drug release from biodegrading microspheres [J].
Batycky, RP ;
Hanes, J ;
Langer, R ;
Edwards, DA .
JOURNAL OF PHARMACEUTICAL SCIENCES, 1997, 86 (12) :1464-1477
[6]  
Bicerano J., 1996, PREDICTION POLYM PRO, V2nd
[7]   Encapsulation into amphiphilic polyanhydride microparticles stabilizes Yersinia pestis antigens [J].
Carrillo-Conde, Brenda ;
Schiltz, Elise ;
Yu, Jing ;
Minion, F. Chris ;
Phillips, Gregory J. ;
Wannemuehler, Michael J. ;
Narasimhan, Balaji .
ACTA BIOMATERIALIA, 2010, 6 (08) :3110-3119
[8]   Docking Ligands into Flexible and Solvated Macromolecules. 3. Impact of Input Ligand Conformation, Protein Flexibility, and Water Molecules on the Accuracy of Docking Programs [J].
Corbeil, Christopher R. ;
Moitessier, Nicolas .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2009, 49 (04) :997-1009
[9]   Encapsulation, stabilization, and release of BSA-FITC from polyanhydride microspheres [J].
Determan, AS ;
Trewyn, BG ;
Lin, VSY ;
Nilsen-Hamilton, M ;
Narasimhan, B .
JOURNAL OF CONTROLLED RELEASE, 2004, 100 (01) :97-109
[10]   Modeling and sensitivity analysis of acoustic release of Doxorubicin from unstabilized pluronic P105 using an Artificial Neural Network model [J].
Husseini, Ghaleb A. ;
Abdel-Jabbar, Nabil M. ;
Mjalli, Farouq S. ;
Pitt, William G. .
TECHNOLOGY IN CANCER RESEARCH & TREATMENT, 2007, 6 (01) :49-56