An all-atom simulation study on intermolecular interaction of DMSO-water system

被引:47
|
作者
Lei, Y [1 ]
Li, HR [1 ]
Han, SJ [1 ]
机构
[1] Zhejiang Univ, Dept Chem, Hangzhou 310027, Peoples R China
关键词
D O I
10.1016/j.cplett.2003.09.064
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An all-atom dimethyl sulfoxide (DMSO) model and a TIP5P water model have been adopted for molecular dynamics simulation. Two new qualities eta(rel)(E) and eta(rel) are introduced to describe the anomalous nonideal behaviors of DMSO-water mixtures. The simulation is compared with chemical shift and excess enthalpy of mixing, which shows good concentration dependences. In addition, our all-atom simulation also indicates that the C-H groups of DMSO may interact with the oxygen atoms of water and DMSO. The weak C-(HO)-O-... contacts and the strong O-(HO)-O-... hydrogen bonds represent the consistent concentration dependences, which exhibits the cooperation effect. (C) 2003 Elsevier B.V. All rights reserved.
引用
收藏
页码:542 / 548
页数:7
相关论文
共 50 条
  • [31] All-atom molecular dynamics simulation of proteins in crowded environments
    Sugita, Yuji
    Feig, Michael
    New Developments in NMR, 2020, 2020-January (21): : 228 - 248
  • [32] All-atom simulation of the folding and binding of an intrinsically disordered protein
    Ithuralde, Raul
    Roitberg, Adrian
    Turjanski, Adrian
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2015, 249
  • [33] A Free-Energy Approach for All-Atom Protein Simulation
    Verma, Abhinav
    Wenzel, Wolfgang
    BIOPHYSICAL JOURNAL, 2009, 96 (09) : 3483 - 3494
  • [34] All-atom simulation of the HET-s prion replication
    Terruzzi, Luca
    Spagnolli, Giovanni
    Boldrini, Alberto
    Requena, Jesus R.
    Biasini, Emiliano
    Faccioli, Pietro
    PLOS COMPUTATIONAL BIOLOGY, 2020, 16 (09)
  • [35] Protein Partitioning to Lipid Domains in All-Atom MD Simulation
    Pantelopulos, George A.
    Bandara, Asanga
    Straub, John E.
    BIOPHYSICAL JOURNAL, 2019, 116 (03) : 373A - 373A
  • [36] All-atom replica exchange molecular simulation of protein BBL
    Zhang, Jian
    Li, Wenfei
    Wang, Jun
    Qin, Meng
    Wang, Wei
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2008, 72 (03) : 1038 - 1047
  • [37] Rank-dependent orientational relaxation in an ionic liquid: an all-atom simulation study
    Tamisra Pal
    Ranjit Biswas
    Theoretical Chemistry Accounts, 2013, 132
  • [38] Rank-dependent orientational relaxation in an ionic liquid: an all-atom simulation study
    Pal, Tamisra
    Biswas, Ranjit
    THEORETICAL CHEMISTRY ACCOUNTS, 2013, 132 (04) : 1 - 12
  • [39] Rayleigh-Plesset equation of the bubble stable cavitation in water: A nonequilibrium all-atom molecular dynamics simulation study
    Viet Hoang Man
    Mai Suan Li
    Derreumaux, Philippe
    Nguyen, Phuong H.
    JOURNAL OF CHEMICAL PHYSICS, 2018, 148 (09):
  • [40] All-Atom Molecular Dynamics Simulation of the Altered Protein-Protein Interaction with Metabolites and Ions in the Cytoplasm
    Yu, Isseki
    Feig, Michael
    Sugita, Yuji
    BIOPHYSICAL JOURNAL, 2020, 118 (03) : 217A - 217A