The complete mitochondrial genome of the Ancherythroculter lini (Cypriniformes, Cyprinidea)

被引：2

作者：

Chen, Yibin ^{[1
]}

Hu, Juan ^{[1
]}

Zhao, Huihong ^{[1
]}

Yang, Huirong ^{[1
]}

Liu, Li ^{[1
]}

机构：

[1] South China Agr Univ, Coll Anim Sci, Guangzhou 510642, Guangdong, Peoples R China

来源：

MITOCHONDRIAL DNA PART A | 2016年 / 27卷 / 04期

关键词：

Ancherythroculter lini; mitochondrial genome; phylogenetic tree;

D O I：

10.3109/19401736.2015.1063126

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Ancherythroculter lini is the endemic species of fish in China. In this study, we determined the complete mitochondrial genome of Ancherythroculter lini using the next-generation sequencing (NGS). The total length of the complete mitochondrial genome is 16 616 bp which consists of 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs genes, and a control region. Most of the genes are encoded on the heavy strand except ND6 and eight tRNA genes. The genes order and locations are similar to other vertebrates. The H-strand has a nucleotide composition of 30.78% A, 24.74% T, 16.48% G, and 28.00% C. 13 intergenic spacers and five gene overlaps exist in the complete mitochondrial genome. And, we found the culter genus and Ancherythroculter nigrocauda are more closely related to Ancherythroculter lini by constructing a phylogenetic tree.

引用

页码：3043 / 3044

页数：2

共 11 条

[1]

Green MichaelR., 2012, Molecular cloning: a laboratory manual, V1

[2] Complete mitochondrial genome of Gekko chinensis (Squamata, Gekkonidae) [J].

Hao, Shuangli ;

Ping, Jun ;

Zhang, Yongpu .

MITOCHONDRIAL DNA PART A, 2016, 27 (06) :4226-4227

[3]

Luo Y., 1998, Fauna Sinica. Osteichthyes. Cypriniformes II, P112

[4] Complete mitochondrial genome of Malaysian Mahseer (Tor tambroides) [J].

Norfatimah, M. Y. ;

Teh, L. K. ;

Salleh, M. Z. ;

Isa, M. N. Mat ;

SitiAzizah, M. N. .

GENE, 2014, 548 (02) :263-269

[5] jModelTest: Phylogenetic model averaging [J].

Posada, David .

MOLECULAR BIOLOGY AND EVOLUTION, 2008, 25 (07) :1253-1256

[6] RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models [J].

Stamatakis, Alexandros .

BIOINFORMATICS, 2006, 22 (21) :2688-2690

[7] The complete mitochondrial genome sequence of Ancherythroculter nigrocauda (Cypriniformes:Cyprinidae) [J].

Wan, Quan ;

Chen, Ying ;

Cheng, Qiqun ;

Qiao, Huiying .

MITOCHONDRIAL DNA, 2013, 24 (06) :627-629

[8] The complete mitochondrial genome of Mongolian redfin, Chanodichthys mongolicus (Cypriniformes: Cyprinidae): genome description and related phylogenetic analyses [J].

Wei, Min ;

Yang, Yingming ;

Yu, Peng ;

Pan, Dongdong ;

Wan, Quan .

MITOCHONDRIAL DNA PART A, 2016, 27 (01) :20-21

[9] The complete mitochondrial genome of the amoy croaker Argyrosomus amoyensis (Perciformes, Sciaenidae) [J].

Yang, Huirong ;

Zhao, Huihong ;

Sun, Jijia ;

Yang, Zituo ;

Xiao, Shibin ;

Li, Guifeng ;

Liu, Li .

MITOCHONDRIAL DNA PART A, 2016, 27 (02) :1530-1532

[10] The complete mitochondrial genome of the Hemibarbus medius (Cypriniformes, Cyprinidae) [J].

Yang, Huirong ;

Zhao, Huihong ;

Sun, Jijia ;

Chen, Yibin ;

Liu, Lijie ;

Zhang, Yong ;

Liu, Li .

MITOCHONDRIAL DNA PART A, 2016, 27 (02) :1070-1072

← 1 2 →