共 23 条
Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules
被引:123
作者:

Constantin, Tudor P.
论文数: 0 引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA

Silva, Gloria L.
论文数: 0 引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA

Robertson, Kelly L.
论文数: 0 引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA

Hamilton, Tamara P.
论文数: 0 引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA

Fague, Kaitlin
论文数: 0 引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA

Waggoner, Alan S.
论文数: 0 引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Mol Biosensor & Imaging Ctr, Pittsburgh, PA 15213 USA Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA

Armitage, Bruce A.
论文数: 0 引用数: 0
h-index: 0
机构:
Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA
Carnegie Mellon Univ, Mol Biosensor & Imaging Ctr, Pittsburgh, PA 15213 USA Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA
机构:
[1] Carnegie Mellon Univ, Dept Chem, Pittsburgh, PA 15213 USA
[2] Carnegie Mellon Univ, Mol Biosensor & Imaging Ctr, Pittsburgh, PA 15213 USA
关键词:
D O I:
10.1021/ol702920e
中图分类号:
O62 [有机化学];
学科分类号:
070303 ;
081704 ;
摘要:
A new fluorogenic cyanine dye was synthesized and found to have low fluorescence quantum yield in fluid solution and in the presence of double-stranded DNA but 80-fold enhanced fluorescence in viscous glycerol solution. An RNA aptamer selected for binding to the new dye exhibits K-d = 87 nM and 60-fold fluorescence enhancement. The dye-aptamer pair is a fluoromodule that can be incorporated into fluorescent sensors and labels.
引用
收藏
页码:1561 / 1564
页数:4
相关论文
共 23 条
[1]
Development of a fluorescent probe for the study of nucleosome assembly and dynamics
[J].
Babendure, J
;
Liddell, PA
;
Bash, R
;
LoVullo, D
;
Schiefer, TK
;
Williams, M
;
Daniel, DC
;
Thompson, M
;
Taguchi, AKW
;
Lohr, D
;
Woodbury, NW
.
ANALYTICAL BIOCHEMISTRY,
2003, 317 (01)
:1-11

Babendure, J
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

Liddell, PA
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

Bash, R
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

LoVullo, D
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

Schiefer, TK
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

Williams, M
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

Daniel, DC
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

Thompson, M
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

Taguchi, AKW
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

Lohr, D
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA

Woodbury, NW
论文数: 0 引用数: 0
h-index: 0
机构:
Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA Arizona State Univ, Dept Chem & Biochem, Tempe, AZ 85287 USA
[2]
Aptamers switch on fluorescence of triphenylmethane dyes
[J].
Babendure, JR
;
Adams, SR
;
Tsien, RY
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2003, 125 (48)
:14716-14717

Babendure, JR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Howard Hughes Med Inst, La Jolla, CA 92093 USA

Adams, SR
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Diego, Dept Pharmacol, Howard Hughes Med Inst, La Jolla, CA 92093 USA

Tsien, RY
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif San Diego, Dept Pharmacol, Howard Hughes Med Inst, La Jolla, CA 92093 USA Univ Calif San Diego, Dept Pharmacol, Howard Hughes Med Inst, La Jolla, CA 92093 USA
[3]
Thiazole orange-peptide conjugates: Sensitivity of DNA binding to chemical structure
[J].
Carreon, JR
;
Mahon, KP
;
Kelley, SO
.
ORGANIC LETTERS,
2004, 6 (04)
:517-519

Carreon, JR
论文数: 0 引用数: 0
h-index: 0
机构:
Boston Coll, Eugene F Merkert Chem Ctr, Chestnut Hill, MA 02467 USA Boston Coll, Eugene F Merkert Chem Ctr, Chestnut Hill, MA 02467 USA

Mahon, KP
论文数: 0 引用数: 0
h-index: 0
机构:
Boston Coll, Eugene F Merkert Chem Ctr, Chestnut Hill, MA 02467 USA Boston Coll, Eugene F Merkert Chem Ctr, Chestnut Hill, MA 02467 USA

Kelley, SO
论文数: 0 引用数: 0
h-index: 0
机构:
Boston Coll, Eugene F Merkert Chem Ctr, Chestnut Hill, MA 02467 USA Boston Coll, Eugene F Merkert Chem Ctr, Chestnut Hill, MA 02467 USA
[4]
Isolation of high-affinity GTP aptamers from partially structured RNA libraries
[J].
Davis, JH
;
Szostak, JW
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2002, 99 (18)
:11616-11621

Davis, JH
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Howard Hughes Med Inst, Boston, MA 02114 USA

Szostak, JW
论文数: 0 引用数: 0
h-index: 0
机构:
Massachusetts Gen Hosp, Howard Hughes Med Inst, Boston, MA 02114 USA Massachusetts Gen Hosp, Howard Hughes Med Inst, Boston, MA 02114 USA
[5]
Genetic screens and selections for small molecules based on a synthetic riboswitch that activates protein translation
[J].
Desai, SK
;
Gallivan, JP
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2004, 126 (41)
:13247-13254

Desai, SK
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Chem, Atlanta, GA 30322 USA

Gallivan, JP
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Chem, Atlanta, GA 30322 USA
[6]
INVITRO SELECTION OF RNA MOLECULES THAT BIND SPECIFIC LIGANDS
[J].
ELLINGTON, AD
;
SZOSTAK, JW
.
NATURE,
1990, 346 (6287)
:818-822

ELLINGTON, AD
论文数: 0 引用数: 0
h-index: 0
机构:
MASSACHUSETTS GEN HOSP,DEPT MOLEC BIOL,BOSTON,MA 02114 MASSACHUSETTS GEN HOSP,DEPT MOLEC BIOL,BOSTON,MA 02114

SZOSTAK, JW
论文数: 0 引用数: 0
h-index: 0
机构:
MASSACHUSETTS GEN HOSP,DEPT MOLEC BIOL,BOSTON,MA 02114 MASSACHUSETTS GEN HOSP,DEPT MOLEC BIOL,BOSTON,MA 02114
[7]
Ultrafast excited-state dynamics of DNA fluorescent intercalators:: New insight into the fluorescence enhancement mechanism
[J].
Fuerstenberg, Alexandre
;
Julliard, Marc D.
;
Deligeorgiev, Todor G.
;
Gadjev, Nikolai I.
;
Vasilev, Aleksey A.
;
Vauthey, Eric
.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2006, 128 (23)
:7661-7669

Fuerstenberg, Alexandre
论文数: 0 引用数: 0
h-index: 0
机构: Univ Geneva, Dept Phys Chem, CH-1211 Geneva 4, Switzerland

Julliard, Marc D.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Geneva, Dept Phys Chem, CH-1211 Geneva 4, Switzerland

Deligeorgiev, Todor G.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Geneva, Dept Phys Chem, CH-1211 Geneva 4, Switzerland

Gadjev, Nikolai I.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Geneva, Dept Phys Chem, CH-1211 Geneva 4, Switzerland

Vasilev, Aleksey A.
论文数: 0 引用数: 0
h-index: 0
机构: Univ Geneva, Dept Phys Chem, CH-1211 Geneva 4, Switzerland

Vauthey, Eric
论文数: 0 引用数: 0
h-index: 0
机构: Univ Geneva, Dept Phys Chem, CH-1211 Geneva 4, Switzerland
[8]
Laser-mediated, site-specific inactivation of RNA transcripts
[J].
Grate, D
;
Wilson, C
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
1999, 96 (11)
:6131-6136

Grate, D
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif Santa Cruz, Dept Biol, Sinsheimer Labs, Santa Cruz, CA 95064 USA

Wilson, C
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Santa Cruz, Dept Biol, Sinsheimer Labs, Santa Cruz, CA 95064 USA Univ Calif Santa Cruz, Dept Biol, Sinsheimer Labs, Santa Cruz, CA 95064 USA
[9]
Fluorescence detection of specific sequence of nucleic acids by oxazole yellow-linked oligonucleotides. Homogeneous quantitative monitoring of in vitro transcription
[J].
Ishiguro, T
;
Saitoh, J
;
Yawata, H
;
Otsuka, M
;
Inoue, T
;
Sugiura, Y
.
NUCLEIC ACIDS RESEARCH,
1996, 24 (24)
:4992-4997

Ishiguro, T
论文数: 0 引用数: 0
h-index: 0
机构:
KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN

Saitoh, J
论文数: 0 引用数: 0
h-index: 0
机构:
KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN

Yawata, H
论文数: 0 引用数: 0
h-index: 0
机构:
KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN

Otsuka, M
论文数: 0 引用数: 0
h-index: 0
机构:
KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN

Inoue, T
论文数: 0 引用数: 0
h-index: 0
机构:
KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN

Sugiura, Y
论文数: 0 引用数: 0
h-index: 0
机构:
KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN KYOTO UNIV,CHEM RES INST,UJI,KYOTO 611,JAPAN
[10]
THIAZOLE ORANGE - A NEW DYE FOR RETICULOCYTE ANALYSIS
[J].
LEE, LG
;
CHEN, CH
;
CHIU, LA
.
CYTOMETRY,
1986, 7 (06)
:508-517

LEE, LG
论文数: 0 引用数: 0
h-index: 0

CHEN, CH
论文数: 0 引用数: 0
h-index: 0

CHIU, LA
论文数: 0 引用数: 0
h-index: 0