Polycyclic aromatic DNA-Base surrogates: High-affinity binding to an adenine-specific base-flipping DNA methyltransferase

被引:74
作者
Beuck, C
Singh, I
Bhattacharya, A
Heckler, W
Parmar, VS
Seitz, O
Weinhold, E
机构
[1] Humboldt Univ, Inst Chem, D-12489 Berlin, Germany
[2] Rhein Westfal TH Aachen, Inst Organ Chem, D-52056 Aachen, Germany
[3] Max Planck Inst Mol Physiol, D-44227 Dortmund, Germany
[4] Univ Delhi, Dept Chem, Bioorgan Lab, Delhi 110007, India
关键词
abasic sites; DNA methylation; DNA-protein interactions; enzymes; glycosides; nucleic acids;
D O I
10.1002/anie.200219972
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Filling the hole is a strategy that confers high-affinity DNA binding to the M·TaqI DNA methyltransferase. Aromatic base surrogates (e.g. pyrene, red in picture) were introduced into DNA by means of organocuprate-mediated C-glycosylations. A new competitive binding assay revealed that DNA with aromatic base surrogates placed opposite to the target base binds to M·TaqI with up to 400-fold-enhanced affinity.
引用
收藏
页码:3958 / 3960
页数:3
相关论文
共 17 条
[1]   SYNTHESIS OF C-GLUCOSIDES BY REACTIONS OF GLUCOSYL HALIDES WITH ORGANOCUPRATES [J].
BIHOVSKY, R ;
SELICK, C ;
GIUSTI, I .
JOURNAL OF ORGANIC CHEMISTRY, 1988, 53 (17) :4026-4031
[2]   AdoMet-dependent methylation, DNA methyltransferases and base flipping [J].
Cheng, XD ;
Roberts, RJ .
NUCLEIC ACIDS RESEARCH, 2001, 29 (18) :3784-3795
[3]  
CHENG XD, 1995, ANNU REV BIOPH BIOM, V24, P293, DOI 10.1146/annurev.bb.24.060195.001453
[4]   Structure of the N6-adenine DNA methyltransferase M•Taql in complex with DNA and a cofactor analog [J].
Goedecke, K ;
Pignot, M ;
Goody, RS ;
Scheidig, AJ ;
Weinhold, E .
NATURE STRUCTURAL BIOLOGY, 2001, 8 (02) :121-125
[5]   An essential role for DNA adenine methylation in bacterial virulence [J].
Heithoff, DM ;
Sinsheimer, RL ;
Low, DA ;
Mahan, MJ .
SCIENCE, 1999, 284 (5416) :967-970
[6]   ALPHA-THYMIDIN [J].
HOFFER, M .
CHEMISCHE BERICHTE-RECUEIL, 1960, 93 (12) :2777-2781
[7]   2-Aminopurine as a fluorescent probe for DNA base flipping by methyltransferases [J].
Holz, B ;
Klimasauskas, S ;
Serva, S ;
Weinhold, E .
NUCLEIC ACIDS RESEARCH, 1998, 26 (04) :1076-1083
[8]  
Jeltsch A, 2002, CHEMBIOCHEM, V3, P275, DOI 10.1002/1439-7633(20020402)3:4<274::AID-CBIC274>3.0.CO
[9]  
2-S
[10]   Base-flipping mutations of uracil DNA glycosylase: substrate rescue using a pyrene nucleotide wedge [J].
Jiang, YL ;
Stivers, JT ;
Song, FH .
BIOCHEMISTRY, 2002, 41 (37) :11248-11254