Transfer Learning for Multicenter Classification of Chronic Obstructive Pulmonary Disease

被引:58
作者
Cheplygina, Veronika [1 ,2 ,3 ]
Pena, Isabel Pino [4 ]
Pedersen, Jesper Holst [5 ]
Lynch, David A. [6 ]
Sorensen, Lauge [7 ]
de Bruijne, Marleen [1 ,2 ,7 ]
机构
[1] Erasmus MC Univ Med Ctr Rotterdam, Dept Med Informat, Biomed Imaging Grp Rotterdam, NL-3015 CE Rotterdam, Netherlands
[2] Erasmus MC Univ Med Ctr Rotterdam, Dept Radiol, Biomed Imaging Grp Rotterdam, NL-3015 CE Rotterdam, Netherlands
[3] Eindhoven Univ Technol, Med Image Anal Grp, NL-5612 AZ Eindhoven, Netherlands
[4] Aalborg Univ, Dept Hlth Sci & Technol, DK-9100 Aalborg, Denmark
[5] Univ Copenhagen, Rigshosp, Dept Thorac Surg, DK-1165 Copenhagen, Denmark
[6] Natl Jewish Hlth, Dept Radiol, Denver, CO 80206 USA
[7] Univ Copenhagen, Image Sect, Dept Comp Sci, DK-1165 Copenhagen, Denmark
关键词
Chronic obstructive pulmonary disease (COPD); computed tomography (CT); domain adaptation; importance weighting; lung; multiple instance learning; transfer learning; COMPUTED-TOMOGRAPHY; DOMAIN ADAPTATION; EMPHYSEMA; IMAGES; QUANTIFICATION; SEGMENTATION; DESIGN; COPD;
D O I
10.1109/JBHI.2017.2769800
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Chronic obstructive pulmonary disease (COPD) is a lung disease that can be quantified using chest computed tomography scans. Recent studies have shown that COPD can be automatically diagnosed using weakly supervised learning of intensity and texture distributions. However, up till now such classifiers have only been evaluated on scans from a single domain, and it is unclear whether they would generalize across domains, such as different scanners or scanning protocols. To address this problem, we investigate classification of COPD in a multicenter dataset with a total of 803 scans from three different centers, four different scanners, with heterogenous subject distributions. Our method is based on Gaussian texture features, and a weighted logistic classifier, which increases the weights of samples similar to the test data. We show that Gaussian texture features outperform intensity features previously used in multicenter classification tasks. We also show that a weighting strategy based on a classifier that is trained to discriminate between scans from different domains can further improve the results. To encourage further research into transfer learning methods for the classification of COPD, upon acceptance of this paper we will release two feature datasets used in this study on http://bigr.nl/research/projects/copd.
引用
收藏
页码:1486 / 1496
页数:11
相关论文
共 38 条
[31]   Unsupervised Pre-training Across Image Domains Improves Lung Tissue Classification [J].
Schlegl, Thomas ;
Ofner, Joachim ;
Langs, Georg .
MEDICAL COMPUTER VISION: ALGORITHMS FOR BIG DATA, 2014, 8848 :82-93
[32]   Improving predictive inference under covariate shift by weighting the log-likelihood function [J].
Shimodaira, H .
JOURNAL OF STATISTICAL PLANNING AND INFERENCE, 2000, 90 (02) :227-244
[33]   Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning [J].
Shin, Hoo-Chang ;
Roth, Holger R. ;
Gao, Mingchen ;
Lu, Le ;
Xu, Ziyue ;
Nogues, Isabella ;
Yao, Jianhua ;
Mollura, Daniel ;
Summers, Ronald M. .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2016, 35 (05) :1285-1298
[34]   Texture-Based Analysis of COPD: A Data-Driven Approach [J].
Sorensen, Lauge ;
Nielsen, Mads ;
Lo, Pechin ;
Ashraf, Haseem ;
Pedersen, Jesper H. ;
de Bruijne, Marleen .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2012, 31 (01) :70-78
[35]   Quantitative Analysis of Pulmonary Emphysema Using Local Binary Patterns [J].
Sorensen, Lauge ;
Shaker, Saher B. ;
de Bruijne, Marleen .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2010, 29 (02) :559-569
[36]   Weighting training images by maximizing distribution similarity for supervised segmentation across scanners [J].
van Opbroek, Annegreet ;
Vernooij, Meike W. ;
Ikram, M. Arfan ;
de Bruijne, Marleen .
MEDICAL IMAGE ANALYSIS, 2015, 24 (01) :245-254
[37]   Transfer Learning Improves Supervised Image Segmentation Across Imaging Protocols [J].
van Opbroek, Annegreet ;
Ikram, M. Arfan ;
Vernooij, Meike W. ;
de Bruijne, Marleen .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2015, 34 (05) :1018-1030
[38]   Global Strategy for the Diagnosis, Management, and Prevention of Chronic Obstructive Pulmonary Disease GOLD Executive Summary [J].
Vestbo, Jorgen ;
Hurd, Suzanne S. ;
Agusti, Alvar G. ;
Jones, Paul W. ;
Vogelmeier, Claus ;
Anzueto, Antonio ;
Barnes, Peter J. ;
Fabbri, Leonardo M. ;
Martinez, Fernando J. ;
Nishimura, Masaharu ;
Stockley, Robert A. ;
Sin, Don D. ;
Rodriguez-Roisin, Roberto .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2013, 187 (04) :347-365