P-body components, Dhh1 and Pat1, are involved in tRNA nuclear-cytoplasmic dynamics

被引:15
|
作者
Hurto, Rebecca L. [1 ]
Hopper, Anita K. [1 ]
机构
[1] Ohio State Univ, Dept Mol Genet, Ctr RNA Biol, Columbus, OH 43210 USA
基金
美国国家卫生研究院;
关键词
Prt1; Lsm1; starvation; translation; nutrient availability; nuclear import and export; SACCHAROMYCES-CEREVISIAE; MESSENGER-RNA; PROCESSING BODIES; TRANSLATIONAL CONTROL; EXPORT RECEPTOR; GENE-EXPRESSION; STRESS GRANULES; YEAST; AMINOACYLATION; ACCUMULATION;
D O I
10.1261/rna.2558511
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The nuclear-cytoplasmic distribution of tRNA depends on the balance between tRNA nuclear export/re-export and retrograde tRNA nuclear import in Saccharomyces cerevisiae. The distribution of tRNA is sensitive to nutrient availability as cells deprived of various nutrients exhibit tRNA nuclear accumulation. Starvation induces numerous events that result in translational repression and P-body formation. This study investigated the possible coordination of these responses with tRNA nuclear-cytoplasmic distribution. Dhh1 and Pat1 function in parallel to promote translation repression and P-body formation in response to starvation. Loss of both, Dhh1 and Pat1, results in a failure to repress translation and to induce P-body formation in response to glucose starvation. This study reports that nutrient deprived dhh1 pat1 cells also fail to accumulate tRNA within nuclei. Conversely, inhibition of translation initiation and induction of P-body formation by overproduction of Dhh1 or Pat1 cause tRNA nuclear accumulation in nutrient-replete conditions. Also, loss of the mRNA decapping activator, Lsm1, causes tRNA nuclear accumulation. However, the coordination between P-body formation, translation repression, and tRNA distribution is limited to the early part of the P-body formation/translation repression pathway as loss of mRNA decapping or 5' to 3' degradation does not influence tRNA nuclear-cytoplasmic dynamics. The data provide the first link between P-body formation/translation initiation and tRNA nuclear-cytoplasmic dynamics. The current model is that Dhh1 and Pat1 function in parallel to promote starvation-induced tRNA nuclear accumulation.
引用
收藏
页码:912 / 924
页数:13
相关论文
共 30 条
  • [1] Pat1 promotes processing body assembly by enhancing the phase separation of the DEAD-box ATPase Dhh1 and RNA
    Sachdev, Ruchika
    Hondele, Maria
    Linsenmeier, Miriam
    Vallotton, Pascal
    Mugler, Christopher F.
    Arosio, Paolo
    Weis, Karsten
    ELIFE, 2019, 8
  • [2] Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes
    Drummond, Sheona P.
    Hildyard, John
    Firczuk, Helena
    Reamtong, Onrapak
    Li, Ning
    Kannambath, Shichina
    Claydon, Amy J.
    Beynon, Robert J.
    Eyers, Claire E.
    McCarthy, John E. G.
    NUCLEIC ACIDS RESEARCH, 2011, 39 (17) : 7764 - 7774
  • [3] Structural analysis of the yeast Dhh1-Pat1 complex reveals how Dhh1 engages Pat1, Edc3 and RNA in mutually exclusive interactions
    Sharif, Humayun
    Ozgur, Sevim
    Sharma, Kundan
    Basquin, Claire
    Urlaub, Henning
    Conti, Elena
    NUCLEIC ACIDS RESEARCH, 2013, 41 (17) : 8377 - 8390
  • [4] Pat1 contains distinct functional domains that promote P-body assembly and activation of decapping
    Pilkington, Guy R.
    Parker, Roy
    MOLECULAR AND CELLULAR BIOLOGY, 2008, 28 (04) : 1298 - 1312
  • [5] mRNA decapping activators Pat1 and Dhh1 regulate transcript abundance and translation to tune cellular responses to nutrient availability
    Vijjamarri, Anil Kumar
    Gupta, Neha
    Onu, Chisom
    Niu, Xiao
    Zhang, Fan
    Kumar, Rakesh
    Lin, Zhenguo
    Greenberg, Miriam L.
    Hinnebusch, Alan G.
    NUCLEIC ACIDS RESEARCH, 2023, 51 (17) : 9314 - 9336
  • [6] Roles of mRNA Fate Modulators Dhh1 and Pat1 in TNRC6-dependent Gene Silencing Recapitulated in Yeast
    Makino, Shiho
    Mishima, Yuichiro
    Inoue, Kunio
    Inada, Toshifumi
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2015, 290 (13) : 8331 - 8347
  • [7] The Cellular Decapping Activators LSm1, Pat1, and Dhh1 Control the Ratio of Subgenomic to Genomic Flock House Virus RNAs
    Gimenez-Barcons, Mireia
    Alves-Rodrigues, Isabel
    Jungfleisch, Jennifer
    Van Wynsberghe, Priscilla M.
    Ahlquist, Paul
    Diez, Juana
    JOURNAL OF VIROLOGY, 2013, 87 (11) : 6192 - 6200
  • [8] Proteomic Analysis of Dhh1 Complexes Reveals a Role for Hsp40 Chaperone Ydj1 in Yeast P-Body Assembly
    Cary, Gregory A.
    Vinh, Dani B. N.
    May, Patrick
    Kuestner, Rolf
    Dudley, Aimee M.
    G3-GENES GENOMES GENETICS, 2015, 5 (11): : 2497 - 2511
  • [9] Pat1 contains distinct functional domains that promote translational repression, P-body assembly and activation of decapping
    Pilkington, Guy Robert
    Nissan, Tracy
    Parker, Roy
    FASEB JOURNAL, 2008, 22
  • [10] Identification of PatL1, a human homolog to yeast P body component Pat1
    Scheller, Nicoletta
    Resa-Infante, Patricia
    de la Luna, Susana
    Galao, Rui Pedro
    Albrecht, Mario
    Kaestner, Lars
    Lipp, Peter
    Lengauer, Thomas
    Meyerhans, Andreas
    Diez, Juana
    BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH, 2007, 1773 (12): : 1786 - 1792