Anisotropy in mechanical unfolding of protein upon partner-assisted pulling and handle-assisted pulling

被引:6
作者
Arora, Nisha [1 ]
Hazra, Jagadish Prasad [1 ]
Rakshit, Sabyasachi [1 ,2 ]
机构
[1] Indian Inst Sci Educ & Res Mohali, Dept Chem Sci, Mohali, Punjab, India
[2] Indian Inst Sci Educ & Res Mohali, Ctr Prot Sci Design & Engn, Mohali, Punjab, India
基金
英国惠康基金;
关键词
ACCELERATED MOLECULAR-DYNAMICS; E-CADHERIN; ADHESION; DEFORMATION; FORCES; CELLS; TITIN; MECHANOTRANSDUCTION; BIOTINYLATION; HEARING;
D O I
10.1038/s42003-021-02445-y
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Proteins as force-sensors respond to mechanical cues and regulate signaling in physiology. Proteins commonly connect the source and response points of mechanical cues in two conformations, independent proteins in end-to-end geometry and protein complexes in handshake geometry. The force-responsive property of independent proteins in end-to-end geometry is studied extensively using single-molecule force spectroscopy (SMFS). The physiological significance of the complex conformations in force-sensing is often disregarded as mere surge protectors. However, with the potential of force-steering, protein complexes possess a distinct mechano-responsive property over individual force-sensors. To decipher, we choose a force-sensing protein, cadherin-23, from tip-link complex and perform SMFS using end-to-end geometry and handshake complex geometry. We measure higher force-resilience of cadherin-23 with preferential shorter extensions in handshake mode of pulling over the direct mode. The handshake geometry drives the force-response of cadherin-23 through different potential-energy landscapes than direct pulling. Analysis of the dynamic network structure of cadherin-23 under tension indicates narrow force-distributions among residues in cadherin-23 in direct pulling, resulting in low force-dissipation paths and low resilience to force. Overall, the distinct and superior mechanical responses of cadherin-23 in handshake geometry than single protein geometry highlight a probable evolutionary drive of protein-protein complexes as force-conveyors over independent ones. Arora, Hazra & Rakshit investigate the significance of complex conformations in force sensing. They found that protein complexes possess a distinct response to mechanical force compared to individual force sensors.
引用
收藏
页数:10
相关论文
共 85 条
[1]   The Bacterial Fimbrial Tip Acts as a Mechanical Force Sensor [J].
Aprikian, Pavel ;
Interlandi, Gianluca ;
Kidd, Brian A. ;
Le Trong, Isolde ;
Tchesnokova, Veronika ;
Yakovenko, Olga ;
Whitfield, Matt J. ;
Bullitt, Esther ;
Stenkamp, Ronald E. ;
Thomas, Wendy E. ;
Sokurenko, Evgeni V. .
PLOS BIOLOGY, 2011, 9 (05)
[2]   The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling [J].
Arnold, K ;
Bordoli, L ;
Kopp, J ;
Schwede, T .
BIOINFORMATICS, 2006, 22 (02) :195-201
[3]   TIP-LINK INTEGRITY AND MECHANICAL TRANSDUCTION IN VERTEBRATE HAIR-CELLS [J].
ASSAD, JA ;
SHEPHERD, GMG ;
COREY, DP .
NEURON, 1991, 7 (06) :985-994
[4]   α-Catenin mediates initial E-cadherin-dependent cell-cell recognition and subsequent bond strengthening [J].
Bajpai, Saumendra ;
Correia, Joana ;
Feng, Yunfeng ;
Figueiredo, Joana ;
Sun, Sean X. ;
Longmore, Gregory D. ;
Suriano, Gianpaolo ;
Wirtz, Denis .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (47) :18331-18336
[5]   Elasticity of individual protocadherin 15 molecules implicates tip links as the gating springs for hearing [J].
Bartsch, Tobias F. ;
Hengel, Felicitas E. ;
Oswald, Aaron ;
Dionne, Gilman ;
Chipendo, Iris V. ;
Mangat, Simranjit S. ;
El Shatanofy, Muhammad ;
Shapiro, Lawrence ;
Mueller, Ulrich ;
Hudspeth, A. J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (22) :11048-11056
[6]  
BELL GI, 1978, SCIENCE, V200, P618, DOI 10.1126/science.347575
[7]   Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone φ, ψ and Side-Chain χ1 and χ2 Dihedral Angles [J].
Best, Robert B. ;
Zhu, Xiao ;
Shim, Jihyun ;
Lopes, Pedro E. M. ;
Mittal, Jeetain ;
Feig, Michael ;
MacKerell, Alexander D., Jr. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (09) :3257-3273
[8]   The speed limit for protein folding measured by triplet-triplet energy transfer [J].
Bieri, O ;
Wirz, J ;
Hellrung, B ;
Schutkowski, M ;
Drewello, M ;
Kiefhaber, T .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (17) :9597-9601
[9]   Mechanical and failure properties of extracellular matrix sheets as a function of structural protein composition [J].
Black, Lauren D. ;
Allen, Philip G. ;
Morris, Shirley M. ;
Stone, Phillip J. ;
Suki, Bela .
BIOPHYSICAL JOURNAL, 2008, 94 (05) :1916-1929
[10]   Network analysis of protein dynamics [J].
Boede, Csaba ;
Kovacs, Istvan A. ;
Szalay, Mate S. ;
Palotai, Robin ;
Korcsmaros, Tamas ;
Csermely, Peter .
FEBS LETTERS, 2007, 581 (15) :2776-2782