A Stoichiometry Driven Universal Spatial Organization of Backbones of Folded Proteins: Are there Chargaff's Rules for Protein Folding?

被引:94
作者
Mittal, Aditya [1 ]
Jayaram, B. [1 ,2 ,3 ]
Shenoy, Sandhya [2 ,3 ]
Bawa, Tejdeep Singh [2 ,3 ]
机构
[1] Indian Inst Technol, Sch Biol Sci, New Delhi 110016, India
[2] Indian Inst Technol, Dept Chem, New Delhi 110016, India
[3] Indian Inst Technol, Supercomp Facil Bioinformat & Computat Biol, New Delhi 110016, India
关键词
MYCOBACTERIUM-TUBERCULOSIS; MOLECULAR-DYNAMICS; PREDICTION; INHIBITORS; SIMULATION; DOCKING;
D O I
10.1080/07391102.2010.10507349
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Protein folding is at least a six decade old problem, since the times of Pauling and Anfinsen. However, rules of protein folding remain elusive till date. In this work, rigorous analyses of several thousand crystal structures of folded proteins reveal a surprisingly simple unifying principle of backbone organization in protein folding. We find that protein folding is a direct consequence of a narrow band of stoichiometric occurrences of amino-acids in primary sequences. regardless of the size and the fold of a protein. We observe that "preferential interactions" between amino-acids do not drive protein folding, contrary to all prevalent views. We dedicate our discovery to the seminal contribution of Chargaff which was one of the major keys to elucidation of the stoichiometry-driven spatially organized double helical structure of DNA.
引用
收藏
页码:133 / 142
页数:10
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