Landscape of the SOX2 protein-protein interactome

被引:56
作者
Fang, Xuefeng [1 ,2 ,3 ,4 ]
Yoon, Jae-Geun [1 ]
Li, Lisha [2 ]
Tsai, Yihsuan S. [3 ]
Zheng, Shu [4 ]
Hood, Leroy [5 ]
Goodlett, David R. [3 ]
Foltz, Gregory [1 ]
Lin, Biaoyang [1 ]
机构
[1] Swedish Med Ctr, Swedish Neurosci Inst, Seattle, WA 98122 USA
[2] Zhejiang Univ, Zhejiang California Int NanoSyst Inst, Hangzhou 310003, Zhejiang, Peoples R China
[3] Univ Washington, Dept Med Chem, Seattle, WA 98195 USA
[4] Zhejiang Univ, Sch Med, Affiliated Hosp 2,China Natl Minist Educ, Inst Canc,Key Lab Canc Prevent & Intervent, Hangzhou 310003, Zhejiang, Peoples R China
[5] Inst Syst Biol, Seattle, WA USA
关键词
Biomedicine; Glioblastoma multiforme; Heterogeneous nuclear ribonucleoprotein; Mass spectrometry; SOX2; PLURIPOTENT STEM-CELLS; RNA-BINDING PROTEIN; HNRNP-K-PROTEIN; TRANSCRIPTION FACTORS; INITIATING CELLS; DNA; PROLIFERATION; GLIOBLASTOMA; OCT4; FIBROBLASTS;
D O I
10.1002/pmic.201000419
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
SOX2 is a key gene implicated in maintaining the stemness of embryonic and adult stem cells that appears to re-activate in several human cancers including glioblastoma multiforme. Using immunoprecipitation (IP)/MS/MS, we identified 144 proteins that are putative SOX2 interacting proteins. Of note, SOX2 was found to interact with several heterogeneous nuclear ribonucleoprotein family proteins, including HNRNPA2B1, HNRNPA3, HNRNPC, HNRNPK, HNRNPL, HNRNPM, HNRNPR, HNRNPU, as well as other ribonucleoproteins, DNA repair proteins and helicases. Gene ontology (GO) analysis revealed that the SOX2 interactome was enriched for GO terms GO:0030529 ribonucleoprotein complex and GO:0004386 helicase activity. These findings indicate that SOX2 associates with the heterogeneous nuclear ribonucleoprotein complex, suggesting a possible role for SOX2 in post-transcriptional regulation in addition to its function as a transcription factor.
引用
收藏
页码:921 / 934
页数:14
相关论文
共 51 条
[1]   RNA, helicases: Regulators of differentiation [J].
Abdelhaleem, M .
CLINICAL BIOCHEMISTRY, 2005, 38 (06) :499-503
[2]   Synergistic activation of the fibroblast growth factor 4 enhancer by Sox2 and Oct-3 depends on protein-protein interactions facilitated by a specific spatial arrangement of factor binding sites [J].
Ambrosetti, DC ;
Basilico, C ;
Dailey, L .
MOLECULAR AND CELLULAR BIOLOGY, 1997, 17 (11) :6321-6329
[3]   Proteomic characterization of messenger ribonucleoprotein complexes bound to nontranslated or translated poly(A) mRNAs in the rat cerebral cortex [J].
Angenstein, F ;
Evans, AM ;
Ling, SC ;
Settlage, RE ;
Ficarro, S ;
Carrero-Martinez, FA ;
Shabanowitz, J ;
Hunt, DF ;
Greenough, WT .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (08) :6496-6503
[4]   CoAA, a nuclear receptor coactivator protein at the interface of transcriptional coactivation and RNA splicing [J].
Auboeuf, D ;
Dowhan, DH ;
Li, XT ;
Larkin, K ;
Ko, L ;
Berget, SM ;
O'Malley, BW .
MOLECULAR AND CELLULAR BIOLOGY, 2004, 24 (01) :442-453
[5]   Multipotent cell lineages in early mouse development depend on SOX2 function [J].
Avilion, AA ;
Nicolis, SK ;
Pevny, LH ;
Perez, L ;
Vivian, N ;
Lovell-Badge, R .
GENES & DEVELOPMENT, 2003, 17 (01) :126-140
[6]   Localization of the developmental timing regulator Lin28 to mRNP complexes, P-bodies and stress granules [J].
Balzer, Erica ;
Moss, Eric G. .
RNA BIOLOGY, 2007, 4 (01) :16-25
[7]   Human POMp75 is identified as the pro-oncoprotein TLS/FUS: both POMp75 and POMp100 DNA homologous pairing activities are associated to cell proliferation [J].
Bertrand, P ;
Akhmedov, AT ;
Delacote, F ;
Durrbach, A ;
Lopez, BS .
ONCOGENE, 1999, 18 (31) :4515-4521
[8]   Functional Pre-mRNA trans-Splicing of Coactivator CoAA and Corepressor RBM4 during Stem/Progenitor Cell Differentiation [J].
Brooks, Yang S. ;
Wang, Guanghu ;
Yang, Zheqiong ;
Smith, Kimberly K. ;
Bieberich, Erhard ;
Ko, Lan .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 284 (27) :18033-18046
[9]   The RNA-binding protein Sam68 contributes to proliferation and survival of human prostate cancer cells [J].
Busa, R. ;
Paronetto, M. P. ;
Farini, D. ;
Pierantozzi, E. ;
Botti, F. ;
Angelini, D. F. ;
Attisani, F. ;
Vespasiani, G. ;
Sette, C. .
ONCOGENE, 2007, 26 (30) :4372-4382
[10]   Having it both ways: transcription factors that bind DNA and RNA [J].
Cassiday, LA ;
Maher, LJ .
NUCLEIC ACIDS RESEARCH, 2002, 30 (19) :4118-4126