TRANSCRIPTOME SEQUENCING AND MARKER DEVELOPMENT FOR FOUR UNDERUTILIZED LEGUMES

被引:44
作者
Chapman, Mark A. [1 ,2 ]
机构
[1] Univ Southampton, Ctr Biol Sci, Southampton SO17 1BJ, Hants, England
[2] Univ Southampton, Ctr Underutilised Crops, Southampton SO17 1BJ, Hants, England
来源
APPLICATIONS IN PLANT SCIENCES | 2015年 / 3卷 / 02期
关键词
beans; drought; legumes; microsatellites; simple sequence repeats (SSRs); transcriptome; ORTHOLOG SET COS; EVOLUTION; GENOME; GENETICS; GENES;
D O I
10.3732/apps.1400111
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Premise of the study: Combating threats to food and nutrition security in the context of climate change and global population increase is one of the highest priorities of major international organizations. Hundreds of species are grown on a small scale in some of the most drought/flood-prone regions of the world and as such may harbor some of the most environmentally tolerant crops (and alleles). Methods and Results: In this study, transcriptomes were sequenced, assembled, and annotated for four underutilized legume crops. Microsatellite markers were identified in each species, as well as a conserved orthologous set of markers for cross-family phylogenetics and comparative mapping, which were ground-truthed on a panel of diverse legume germplasm. Conclusions: An understanding of these underutilized legumes will inform crop selection and breeding by allowing the investigation of genetic variation and the genetic basis of adaptive traits to be established.
引用
收藏
页数:5
相关论文
共 33 条
[1]  
Abd El-Moneim Ali M., 2000, Food and Nutrition Bulletin, V21, P493
[2]  
[Anonymous], 2012, The state of food insecurity in the world 2012
[3]  
[Anonymous], 2013, LIT STUDY NUTR BENEF
[4]  
[Anonymous], AGR FOOD SECURITY NU
[5]  
[Anonymous], WING BEAN HIGH PROT
[6]  
[Anonymous], 2006, ANGIOSPERM PHYLOGENY
[7]  
[Anonymous], DRYAD DIGITAL REPOSI
[8]   Crop evolution: from genetics to genomics [J].
Burke, John M. ;
Burger, Jutta C. ;
Chapman, Mark A. .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2007, 17 (06) :525-532
[9]   Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers [J].
Cabrera, Antonio ;
Kozik, Alex ;
Howad, Werner ;
Arus, Pere ;
Iezzoni, Amy F. ;
van der Knaap, Esther .
BMC GENOMICS, 2009, 10
[10]   Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae) [J].
Chapman, Mark A. ;
Chang, JianCheng ;
Weisman, David ;
Kesseli, Rick V. ;
Burke, John M. .
THEORETICAL AND APPLIED GENETICS, 2007, 115 (06) :747-755