Paraburkholderia gardini sp. nov. and Paraburkholderia saeva sp. nov.: Novel aromatic compound degrading bacteria isolated from garden and forest soil samples

被引:8
|
作者
Vanwijnsberghe, Sarah [1 ]
Peeters, Charlotte [1 ]
Cnockaert, Margo [1 ]
De Canck, Evelien [1 ]
Vandamme, Peter [1 ]
机构
[1] Univ Ghent, Dept Biochem & Microbiol, Lab Microbiol, KL Ledeganckstr 35, B-9000 Ghent, Belgium
基金
英国惠康基金;
关键词
Paraburkholderia; Novel species; Microdiversity; Aromatic compound degradation; Comparative genomics; BURKHOLDERIA; QUALITY; GENES;
D O I
10.1016/j.syapm.2022.126318
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Three forest and four botanical garden top soil isolates with unique MALDI-TOF mass spectra were identified as Paraburkholderia strains closely related to Paraburkholderia sartisoli through recA gene sequence analysis. OrthoANIu, digital DNA-DNA hybridization analyses and phylogenomic analyses demonstrated that the five strains represented two new Paraburkholderia species closely related to P. sartisoli. The genome of strain LMG 31841(T) had a cumulative size of 6.3 Mb and a G + C content of 62.64 mol%; strain LMG 32171(T) had a genome size of 5.8 Mb and a G + C content of 62.91 mol%. Hemolysis on horse blood agar, beta-galactosidase and phosphoamidase activity, and assimilation of adipic acid and trisodium citrate allowed phenotypic differentiation of strains LMG 31841(T), LMG 32171(T) and P. sartisoli LMG 24000(T). An analysis of the genomic potential for aromatic compound degradation yielded additional differences among strains representing these three species, but also highlighted some discrepancies between the presence of genes and pathways, and the phenotype revealed through growth experiments using a mineral salts medium supplemented with single aromatic compounds as carbon sources. We propose to classify all isolates from the present study into two novel Paraburkholderia species, for which we propose the names Paraburkholderia gardini with LMG 32171(T)(=CECT 30344(T)) as the type strain, and Paraburkholderia saeva with LMG 31841(T) (=CECT 30338(T)) as the type strain. (C)& nbsp;2022 Elsevier GmbH. All rights reserved.
引用
收藏
页数:16
相关论文
共 50 条
  • [41] Undibacterium baiyunense sp. nov., Undibacterium curvum sp. nov., Undibacterium fentianense sp. nov., Undibacterium flavidum sp. nov., Undibacterium griseum sp. nov., Undibacterium hunanense sp. nov., Undibacterium luofuense sp. nov., Undibacterium nitidum sp. nov., Undibacterium rivi sp. nov., Undibacterium rugosum sp. nov. and Undibacterium umbellatum sp. nov., isolated from streams in China
    Lu, Huibin
    Liu, Fei
    Deng, Tongchu
    Xu, Meiying
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (10)
  • [42] Collimonas silvisoli sp. nov. and Collimonas humicola sp. nov., two novel species isolated from forest soil
    Li, Jiali
    Pan, Mingkai
    Zhang, Xianjiao
    Zhou, Yang
    Feng, Guang-Da
    Zhu, Honghui
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (10)
  • [43] Paraburkholderia caffeinilytica sp nov., isolated from the soil of a tea plantation
    Gao, Ziqing
    Yuan, Yue
    Xu, Lei
    Liu, Ran
    Chen, Ming
    Zhang, Chunzhi
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 : 4185 - 4190
  • [44] Halorussusvallis sp. nov., Halorussusaquaticus sp. nov., Halorussusgelatinilyticus sp. nov., Halorussuslimi sp. nov., Halorussussalilacus sp. nov., Halorussussalinisoli sp. nov.: six extremely halophilic archaea isolated from solar saltern, salt lake and saline soil
    Xi-Wen Zheng
    Zhang-Ping Wu
    Ya-Ping Sun
    Bei-Bei Wang
    Jing Hou
    Heng-Lin Cui
    Extremophiles, 2022, 26
  • [45] Halorussusvallis sp. nov., Halorussusaquaticus sp. nov., Halorussusgelatinilyticus sp. nov., Halorussuslimi sp. nov., Halorussussalilacus sp. nov., Halorussussalinisoli sp. nov.: six extremely halophilic archaea isolated from solar saltern, salt lake and saline soil
    Zheng, Xi-Wen
    Wu, Zhang-Ping
    Sun, Ya-Ping
    Wang, Bei-Bei
    Hou, Jing
    Cui, Heng-Lin
    EXTREMOPHILES, 2022, 26 (03)
  • [46] Halobacillus salinarum sp. nov., Halobacillus shinanisalinarum sp. nov. and Halobacillus amylolyticus sp. nov., isolated from saltern soil
    Kim, Yiseul
    Kim, Seunghwan
    Kwon, Soon-Wo
    Weon, Hang-Yeon
    Naito, Hanako
    Asano, Tomomi
    Hamada, Moriyuki
    Heo, Jun
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2023, 73 (10)
  • [47] Agromyces silvae sp. nov., Rathayibacter soli sp. nov., and Nocardioides terrisoli sp nov., Isolated from Soil .
    Lee, Hyosun
    Chaudhary, Dhiraj Kumar
    Kim, Dong-Uk
    JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY, 2024, 34 (07) : 1475 - 1483
  • [48] Lactobacillus hegangensis sp. nov., Lactobacillus suibinensis sp. nov., Lactobacillus daqingensis sp. nov., Lactobacillus yichunensis sp. nov., Lactobacillus mulanensis sp. nov., Lactobacillus achengensis sp. nov., Lactobacillus wuchangensis sp. nov., Lactobacillus gannanensis sp. nov., Lactobacillus binensis sp. nov. and Lactobacillus angrenensis sp. nov., isolated from Chinese traditional pickle and yogurt
    Long, Guang Yun
    Wei, Yu Xin
    Tu, Wan
    Gu, Chun Tao
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (04) : 2467 - 2484
  • [49] Chryseobacterium edaphi sp. nov. and Chryseobacterium gilvum sp. nov., isolated from soil
    Jung, Yonghee
    Chhetri, Geeta
    Kim, Inhyup
    So, Yoonseop
    Park, Sunho
    Woo, Haejin
    Lee, Ki-Ho
    Seo, Taegun
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2023, 73 (07)
  • [50] Pseudonocardia mongoliensis sp. nov. and Pseudonocardia khuvsgulensis sp. nov., isolated from soil
    Ara, Ismet
    Tsetseg, Baljinova
    Daram, Damdinsuren
    Suto, Manabu
    Ando, Katsuhiko
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2011, 61 : 747 - 756