Paraburkholderia gardini sp. nov. and Paraburkholderia saeva sp. nov.: Novel aromatic compound degrading bacteria isolated from garden and forest soil samples

被引:8
|
作者
Vanwijnsberghe, Sarah [1 ]
Peeters, Charlotte [1 ]
Cnockaert, Margo [1 ]
De Canck, Evelien [1 ]
Vandamme, Peter [1 ]
机构
[1] Univ Ghent, Dept Biochem & Microbiol, Lab Microbiol, KL Ledeganckstr 35, B-9000 Ghent, Belgium
基金
英国惠康基金;
关键词
Paraburkholderia; Novel species; Microdiversity; Aromatic compound degradation; Comparative genomics; BURKHOLDERIA; QUALITY; GENES;
D O I
10.1016/j.syapm.2022.126318
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Three forest and four botanical garden top soil isolates with unique MALDI-TOF mass spectra were identified as Paraburkholderia strains closely related to Paraburkholderia sartisoli through recA gene sequence analysis. OrthoANIu, digital DNA-DNA hybridization analyses and phylogenomic analyses demonstrated that the five strains represented two new Paraburkholderia species closely related to P. sartisoli. The genome of strain LMG 31841(T) had a cumulative size of 6.3 Mb and a G + C content of 62.64 mol%; strain LMG 32171(T) had a genome size of 5.8 Mb and a G + C content of 62.91 mol%. Hemolysis on horse blood agar, beta-galactosidase and phosphoamidase activity, and assimilation of adipic acid and trisodium citrate allowed phenotypic differentiation of strains LMG 31841(T), LMG 32171(T) and P. sartisoli LMG 24000(T). An analysis of the genomic potential for aromatic compound degradation yielded additional differences among strains representing these three species, but also highlighted some discrepancies between the presence of genes and pathways, and the phenotype revealed through growth experiments using a mineral salts medium supplemented with single aromatic compounds as carbon sources. We propose to classify all isolates from the present study into two novel Paraburkholderia species, for which we propose the names Paraburkholderia gardini with LMG 32171(T)(=CECT 30344(T)) as the type strain, and Paraburkholderia saeva with LMG 31841(T) (=CECT 30338(T)) as the type strain. (C)& nbsp;2022 Elsevier GmbH. All rights reserved.
引用
收藏
页数:16
相关论文
共 50 条
  • [21] Paraburkholderia caffeinitolerans sp. nov., a caffeine degrading species isolated from a tea plantation soil sample
    Zi-Qing Gao
    Dong-Ying Zhao
    Lei Xu
    Rui-Ting Zhao
    Ming Chen
    Chun-Zhi Zhang
    Antonie van Leeuwenhoek, 2016, 109 : 1475 - 1482
  • [22] Volcanic Soils as Sources of Novel CO-Oxidizing Paraburkholderia and Burkholderia: Paraburkholderia hiiakae sp nov., Paraburkholderia metrosideri sp nov., Paraburkholderia paradisi sp nov., Paraburkholderia peleae sp nov., and Burkholderia alpina sp nov a Member of the Burkholderia cepacia Complex
    Weber, Carolyn F.
    King, Gary M.
    FRONTIERS IN MICROBIOLOGY, 2017, 8
  • [23] Paraburkholderia dokdonella sp. nov., isolated from a plant from the genus Campanula
    Man-Young Jung
    Myung-Suk Kang
    Ki-Eun Lee
    Eun-Young Lee
    Soo-Je Park
    Journal of Microbiology, 2019, 57 : 107 - 112
  • [24] Paraburkholderia dokdonella sp. nov., isolated from a plant from the genus Campanula
    Jung, Man-Young
    Kang, Myung-Suk
    Lee, Ki-Eun
    Lee, Eun-Young
    Park, Soo-Je
    JOURNAL OF MICROBIOLOGY, 2019, 57 (02) : 107 - 112
  • [25] Dyella humicola sp. nov., Dyella subtropica sp. nov., Dyella silvatica sp. nov. and Dyella silvae sp. nov., isolated from subtropical forest soil
    Feng, Guang-Da
    Deng, Xiaoqin
    Li, Jiali
    Chen, Wendi
    Zhang, Xianjiao
    Zhu, Honghui
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2023, 73 (05)
  • [26] Sphingomonas Immobilis sp. nov., and Sphingomonas natans sp. nov. bacteria isolated from soil
    Choi, Inyoung
    Srinivasan, Sathiyaraj
    Kim, Myung Kyum
    ARCHIVES OF MICROBIOLOGY, 2024, 206 (06)
  • [27] Trinickia dinghuensis sp. nov. and Trinickia fusca sp. nov., isolated from forest soil
    Gao, Zeng-hong
    Zhong, Shu-fen
    Qin, Yi-ning
    Yang, Zi
    Lv, Ying-ying
    Qiu, Li-hong
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (05) : 1390 - 1397
  • [28] Dyella dinghuensis sp. nov. and Dyella choica sp. nov., isolated from forest soil
    Ou, Fang-hong
    Gao, Zeng-hong
    Chen, Mei-hong
    Bi, Jie-yi
    Qiu, Li-hong
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2019, 69 (05) : 1496 - 1503
  • [29] Flavobacterium sandaracinum sp. nov., Flavobacterium caseinilyticum sp. nov., and Flavobacterium hiemivividum sp. nov., novel psychrophilic bacteria isolated from Arctic soil
    Chaudhary, Dhiraj Kumar
    Dahal, Ram Hari
    Kim, Dong-Uk
    Kim, Jaisoo
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (04) : 2269 - 2280
  • [30] Flavobacterium solisilvae sp. nov. and Flavobacterium silvaticum sp. nov., isolated from forest soil
    Jung, Hye Su
    Chun, Byung Hee
    Kim, Hyung Min
    Jeon, Che Ok
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (07)