Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex

被引：151

作者：

Geiser, David M. ^{[1
]}

Al-Hatmi, Abdullah M. S. ^{[2
]}

Aoki, Takayuki ^{[3
]}

Arie, Tsutomu ^{[4
]}

Balmas, Virgilio ^{[5
]}

Barnes, Irene ^{[6
]}

Bergstrom, Gary C. ^{[7
]}

Bhattacharyya, Madan K. ^{[8
]}

Blomquist, Cheryl L. ^{[9
]}

Bowden, Robert L. ^{[10
]}

Brankovics, Balazs ^{[11
]}

Brown, Daren W. ^{[12
]}

Burgess, Lester W. ^{[13
]}

Bushley, Kathryn ^{[14
]}

Busman, Mark ^{[12
]}

Cano-Lira, Jose F. ^{[15
,16
]}

Carrillo, Joseph D. ^{[17
]}

Chang, Hao-Xun ^{[18
]}

Chen, Chi-Yu ^{[19
]}

Chen, Wanquan ^{[20
]}

Chilvers, Martin ^{[21
]}

Chulze, Sofia ^{[22
]}

Coleman, Jeffrey J. ^{[23
]}

Cuomo, Christina A. ^{[24
]}

de Beer, Z. Wilhelm ^{[6
]}

de Hoog, G. Sybren ^{[25
]}

Del Castillo-Munera, Johanna ^{[26
]}

Del Ponte, Emerson M. ^{[27
]}

Dieguez-Uribeondo, Javier ^{[28
]}

Di Pietro, Antonio ^{[29
]}

Edel-Hermann, Veronique ^{[30
]}

Elmer, Wade H. ^{[31
]}

Epstein, Lynn ^{[26
]}

Eskalen, Akif ^{[26
]}

Esposto, Maria Carmela ^{[32
]}

Everts, Kathryne L. ^{[33
]}

Fernandez-Pavia, Sylvia P. ^{[34
]}

da Silva, Gilvan Ferreira ^{[35
]}

Foroud, Nora A. ^{[36
]}

Fourie, Gerda ^{[6
]}

Frandsen, Rasmus J. N. ^{[37
]}

Freeman, Stanley ^{[38
]}

Freitag, Michael ^{[39
]}

Frenkel, Omer ^{[38
]}

Fuller, Kevin K. ^{[40
]}

Gagkaeva, Tatiana ^{[41
]}

Gardiner, Donald M. ^{[42
]}

Glenn, Anthony E. ^{[43
]}

Gold, Scott E. ^{[43
]}

Gordon, Thomas R. ^{[26
]}

机构：

[1] Penn State Univ, Dept Plant Pathol & Environm Microbiol, University Pk, PA 16802 USA

[2] Minist Hlth, Directorate Gen Hlth Serv, Ibri, Oman

[3] Natl Agr & Food Res Org, Genet Resources Ctr, Tsukuba, Ibaraki, Japan

[4] Tokyo Univ Agr & Technol, Fuchu, Tokyo, Japan

[5] Univ Sassari, Dipartimento Agr, Sassari, Italy

[6] Univ Pretoria, Dept Biochem Genet & Microbiol, Pretoria, South Africa

[7] Cornell Univ, Plant Pathol & Plant Microbe Biol Sect, Ithaca, NY 14853 USA

[8] Iowa State Univ, Dept Agron, Ames, IA 50011 USA

[9] Calif Dept Food & Agr, Plant Pest Diagnost Branch, Sacramento, CA 95832 USA

[10] US Dept Agr Agr Res Serv USDA ARS, Hard Winter Wheat Genet Res Unit, Manhattan, KS 66506 USA

[11] Wageningen Univ & Res, Wageningen Plant Res, Wageningen, Netherlands

[12] USDA ARS, Mycotoxin Prevent & Appl Microbiol Res Unit, Peoria, IL 61604 USA

[13] Univ Sydney, Fac Sci, Sydney Inst Agr, Sydney, NSW, Australia

[14] Univ Minnesota, Dept Plant & Microbial Biol, St Paul, MN 55108 USA

[15] Univ Rovira & Virgili, Mycol Unit, Med Sch, Reus, Spain

[16] Univ Rovira & Virgili, Med Sch, IISPV, Reus, Spain

[17] Univ Florida, Gulf Coast Res & Educ Ctr, Wimauma, FL 33598 USA

[18] Natl Taiwan Univ, Dept Plant Pathol & Microbiol, Taipei, Taiwan

[19] Natl Chung Hsing Univ, Dept Plant Pathol, Taichung, Taiwan

[20] Chinese Acad Agr Sci, Inst Plant Protect, State Key Lab Biol Plant Dis & Insect Pests, Beijing, Peoples R China

[21] Michigan State Univ, Dept Plant Soil & Microbial Sci, E Lansing, MI 48824 USA

[22] Natl Univ Rio Cuarto, Res Inst Mycol & Mycotoxicol, Natl Sci & Tech Res Council, Cordoba, Argentina

[23] Auburn Univ, Dept Entomol & Plant Pathol, Auburn, AL 36849 USA

[24] Broad Inst Harvard & MIT, Cambridge, MA 02142 USA

[25] Radboud Univ Nijmegen Med Ctr, Canisius Wilhelmina Hosp, Ctr Expertise Mycol, Dept Med Mycol & Infect Dis, Nijmegen, Netherlands

[26] Univ Calif Davis, Dept Plant Pathol, Davis, CA 95616 USA

[27] Univ Fed Vicosa, Dept Fitopatol, Vicosa, MG, Brazil

[28] Real Jardin Bot CSIC, Dept Mycol, Madrid, Spain

[29] Univ Cordoba, Dept Genet, Campus Excelencia Int Agroalimentario, Cordoba, Spain

[30] French Natl Inst Agr Food & Environm INRAE, Dijon, France

[31] Connecticut Agr Expt Stn, Dept Plant Pathol & Ecol, New Haven, CT 06504 USA

[32] Univ Milan, Dept Biomed Sci Hlth, Milan, Italy

[33] Univ Maryland, Wye Res & Educ Ctr, Queenstown, MD 21658 USA

[34] Univ Michoacana de San Nicolas Hidalgo, Inst Invest Agr & Forestales, Lab Patol Vegetal, Tarimbaro 58880, Michoacan, Mexico

[35] Embrapa Amazonia Ocidental, Manaus, Amazonas, Brazil

[36] Agr & Agri Food Canada, Lethbridge Res & Dev Ctr, Lethbridge, AB T1J 4B1, Canada

[37] Tech Univ Denmark, Dept Biotechnol & Biomed, Lyngby, Denmark

[38] Agr Res Org, Dept Plant Pathol & Weed Res, Volcani Ctr, Rishon Leziyyon, Israel

[39] Oregon State Univ, Dept Biochem & Biophys, Corvallis, OR 97331 USA

[40] Univ Oklahoma, Dept Microbiol & Immunol, Hlth Sci Ctr, Oklahoma City, OK 73104 USA

[41] All Russian Inst Plant Protect, Lab Mycol & Phytopathol, St Petersburg, Russia

[42] CSIRO Agr & Food, St Lucia, Qld, Australia

[43] USDA ARS, Toxicol & Mycotoxin Res Unit, Athens, GA 30605 USA

[44] Univ Delaware, Dept Plant & Soil Sci, Newark, DE 19716 USA

[45] Univ Free State, Dept Genet, Bloemfontein, South Africa

[46] Univ Rovira & Virgili, Dept Ciencies Med Bas, Unitat Microbiol, Reus, Spain

[47] Univ Leon, Dept Mol Biol, Leon, Spain

[48] Rothamsted Res, Dept Biointeract & Crop Protect, Harpenden, Herts, England

[49] Agr & Agri Food Canada, Ottawa Res & Dev Ctr, Ottawa, ON K1A 0C6, Canada

[50] Univ Szeged, Hungarian Acad Sci, MTA SZTE Fungal Pathogenic Mech Res Grp, Szeged, Hungary

来源：

PHYTOPATHOLOGY | 2021年 / 111卷 / 07期

基金：

英国生物技术与生命科学研究理事会; 美国国家科学基金会;

关键词：

evolution; fungal pathogens; NOMENCLATURE; INFECTIONS; EUWALLACEA; DIVERSITY; PATHOGENS; ORIGIN; NAMES;

D O I：

10.1094/PHYTO-08-20-0330-LE

中图分类号：

Q94 [植物学];

学科分类号：

071001 ;

摘要：

Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a Glade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.

引用

页码：1064 / 1079

页数：16

共 84 条

[1]

Aoki Takayuki, 2005, Mycoscience, V46, P162, DOI 10.1007/s10267-005-0235-y

[2] Fusarium azukicola sp nov., an exotic azuki bean root-rot pathogen in Hokkaido, Japan [J].

Aoki, Takayuki ;

Tanaka, Fumio ;

Suga, Haruhisa ;

Hyakumachi, Mitsuro ;

Scandiani, Maria Mercedes ;

O'Donnell, Kerry .

MYCOLOGIA, 2012, 104 (05) :1068-1084

[3]

Baral H.O., 2020, INDEX FUNGORUM, V10, P1

[4]

Bilai V. I., 1955, FUSARII IZD AKAD NAU

[5]

Booth C., 1971, The genus Fiisarium.

[6] DO YOU BELIEVE IN GENERA [J].

BOOTH, C .

TRANSACTIONS OF THE BRITISH MYCOLOGICAL SOCIETY, 1978, 71 (AUG) :1-9

[7] Gain and loss of a transcription factor that regulates late trichothecene biosynthetic pathway genes in Fusarium [J].

Brown, Daren W. ;

Villani, Alessandra ;

Susca, Antonia ;

Moretti, Antonio ;

Hao, Guixia ;

Kim, Hye-Seon ;

Procto, Robert H. ;

McCormick, Susan P. .

FUNGAL GENETICS AND BIOLOGY, 2020, 136

[8] Insights into natural products biosynthesis from analysis of 490 polyketide synthases from Fusarium [J].

Brown, Daren W. ;

Proctor, Robert H. .

FUNGAL GENETICS AND BIOLOGY, 2016, 89 :37-51

[9] New Methods to Calculate Concordance Factors for Phylogenomic Datasets [J].

Bui Quang Minh ;

Hahn, Matthew W. ;

Lanfear, Robert .

MOLECULAR BIOLOGY AND EVOLUTION, 2020, 37 (09) :2727-2733

[10] Analysis of fumonisin contamination and the presence of Fusarium in wheat with kernel black point disease in the United States [J].

Busman, M. ;

Desjardins, A. E. ;

Proctor, R. H. .

FOOD ADDITIVES AND CONTAMINANTS PART A-CHEMISTRY ANALYSIS CONTROL EXPOSURE & RISK ASSESSMENT, 2012, 29 (07) :1092-1100

← 1 2 3 4 5 6 7 8 9 →