Metal binding to a zinc-finger peptide: a comparison between solution and the gas phase

被引:26
作者
Berezovskaya, Yana [2 ]
Armstrong, Craig T. [1 ]
Boyle, Aimee L. [1 ]
Porrini, Massimiliano [2 ]
Woolfson, Derek N. [1 ,3 ]
Barran, Perdita E. [2 ]
机构
[1] Univ Bristol, Sch Chem, Bristol, Avon, England
[2] Univ Edinburgh, Sch Chem, Edinburgh, Midlothian, Scotland
[3] Univ Bristol, Dept Biochem, Bristol, Avon, England
基金
英国工程与自然科学研究理事会; 英国生物技术与生命科学研究理事会;
关键词
D O I
10.1039/c0cc02445g
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Solution-phase spectroscopy and mass spectrometry are used to probe interactions between divalent metal ions and a synthetic Cys(2)His(2) zinc-finger peptide (vCP1). Both methods provide the same order of binding affinity, zinc >= cobalt >> copper >> calcium. Collision-cross-section measurements show that both apo and holo forms are compact. This is corroborated by molecular-dynamics simulations.
引用
收藏
页码:412 / 414
页数:3
相关论文
共 10 条
[1]  
BERG JM, 1990, ANNU REV BIOPHYS BIO, V19, P405
[2]   Conformational Preferences of Linear β-Defensins Are Revealed by Ion Mobility-Mass Spectrometry [J].
De Cecco, Martin ;
Seo, Emily S. ;
Clarke, David J. ;
McCullough, Bryan J. ;
Taylor, Karen ;
Macmillan, Derek ;
Dorin, Julia R. ;
Campopiano, Dominic J. ;
Barran, Perdita E. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (06) :2312-2318
[3]   A 2.2 angstrom resolution crystal structure of a designed zinc finger protein bound to DNA [J].
Kim, CA ;
Berg, JM .
NATURE STRUCTURAL BIOLOGY, 1996, 3 (11) :940-945
[4]   Development of an ion mobility quadrupole time of flight mass spectrometer [J].
McCullough, Bryan J. ;
Kalapothakis, Jason ;
Eastwood, Hayden ;
Kemper, Paul ;
MacMillan, Derek ;
Taylor, Karen ;
Dorin, Julia ;
Barran, Perdita E. .
ANALYTICAL CHEMISTRY, 2008, 80 (16) :6336-6344
[5]   ZINC-DEPENDENT STRUCTURE OF A SINGLE-FINGER DOMAIN OF YEAST ADR1 [J].
PARRAGA, G ;
HORVATH, SJ ;
EISEN, A ;
TAYLOR, WE ;
HOOD, L ;
YOUNG, ET ;
KLEVIT, RE .
SCIENCE, 1988, 241 (4872) :1489-1492
[6]   METAL-BINDING PROPERTIES OF SINGLE AMINO-ACID DELETION MUTANTS OF ZINC FINGER PEPTIDES - STUDIES USING COBALT(II) AS A SPECTROSCOPIC PROBE [J].
SHI, YG ;
BEGER, RD ;
BERG, JM .
BIOPHYSICAL JOURNAL, 1993, 64 (03) :749-753
[7]   Mobilities of carbon cluster ions: Critical importance of the molecular attractive potential [J].
Shvartsburg, AA ;
Schatz, GC ;
Jarrold, MF .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (06) :2416-2423
[8]   A database of 660 peptide ion cross sections: Use of intrinsic size parameters for bona fide predictions of cross sections [J].
Valentine, SJ ;
Counterman, AE ;
Clemmer, DE .
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1999, 10 (11) :1188-1211
[9]   Gas-phase conformations: The ion mobility/ion chromatography method [J].
Wyttenbach, T ;
Bowers, MT .
MODERN MASS SPECTROMETRY, 2003, 225 :207-232
[10]   Intermolecular interactions in biomolecular systems examined by mass spectrometry [J].
Wyttenbach, Thomas ;
Bowers, Michael T. .
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 2007, 58 (511-533) :511-533