N-H•••O versus O-H•••O: density functional calculation and first principle molecular dynamics study on a quinoline-2-carboxamide N-oxide

被引:4
作者
Jezierska, Aneta [1 ]
机构
[1] Univ Wroclaw, Fac Chem, PL-50383 Wroclaw, Poland
关键词
N-oxide; Intramolecular hydrogen bond; Density functional theory; Atoms in molecules; Car-Parrinello molecular dynamics; Gas and crystalline phase; INTRAMOLECULAR HYDROGEN-BOND; DNA STRAND CLEAVAGE; C-H; CAR-PARRINELLO; CRYSTAL; GEOMETRY;
D O I
10.1007/s00894-015-2587-3
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
N-oxide-type compounds are the object of current research interest due to the presence of resonance-assisted N-H center dot center dot center dot O hydrogen bonds. Here, the metric and spectroscopic parameters of N-methyl-quinoline-2-carboxamide 1-oxide were computed on the basis of density functional theory and Car-Parrinello molecular dynamics. Computations were performed in vacuo and in solid state; for both phases additional simulations with Grimme's dispersion correction were carried out. The approaches used were able to reproduce correctly the structural aspects of the studied compound and shed more light on the hydrogen bonding with special focus on bridge proton mobility. Proton transfer phenomena were found not to occur in the investigated compound, and the bridge proton was localized to the donor site. This observation is in agreement with the classical theory of the acidity of donor-acceptor sites. The presence of hydrogen bonding was confirmed using atoms-in-molecules theory. The computational results were compared with available experimental data.
引用
收藏
页码:1 / 10
页数:10
相关论文
共 56 条
[21]   INHOMOGENEOUS ELECTRON-GAS [J].
RAJAGOPAL, AK ;
CALLAWAY, J .
PHYSICAL REVIEW B, 1973, 7 (05) :1912-1919
[22]   CANONICAL DYNAMICS - EQUILIBRIUM PHASE-SPACE DISTRIBUTIONS [J].
HOOVER, WG .
PHYSICAL REVIEW A, 1985, 31 (03) :1695-1697
[23]   VMD: Visual molecular dynamics [J].
Humphrey, W ;
Dalke, A ;
Schulten, K .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1996, 14 (01) :33-38
[24]   Regioselective Introduction of Heteroatoms at the C-8 Position of Quinoline N-Oxides: Remote C-H Activation Using N-Oxide as a Stepping Stone [J].
Hwang, Heejun ;
Kim, Jinwoo ;
Jeong, Jisu ;
Chang, Sukbok .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2014, 136 (30) :10770-10776
[25]   Interactions between Antimalarial Indolone-N-oxide Derivatives and Human Serum Albumin [J].
Ibrahim, Nehal ;
Ibrahim, Hany ;
Kim, Sothea ;
Nallet, Jean-Pierre ;
Nepveu, Francoise .
BIOMACROMOLECULES, 2010, 11 (12) :3341-3351
[26]   Intramolecular charge-inverted hydrogen bond [J].
Jablonski, Miroslaw .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2010, 948 (1-3) :21-24
[27]   Spectroscopic properties of a strongly anharmonic Mannich base N-oxide [J].
Jezierska, Aneta ;
Panek, Jaroslaw J. ;
Koll, Aleksander .
CHEMPHYSCHEM, 2008, 9 (06) :839-846
[28]   First-principle molecular dynamics study of selected Schiff and Mannich bases: Application of two-dimensional potential of mean force to systems with strong intramolecular hydrogen bonds [J].
Jezierska, Aneta ;
Panek, Jaroslaw J. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2008, 4 (03) :375-384
[29]   Structural and electronic structure differences due to the O-H•••O and O-H•••S bond formation in selected benzamide derivatives: a first-principles molecular dynamics study [J].
Jezierska, Aneta ;
Panek, Jaroslaw J. ;
Mazzarello, Riccardo .
THEORETICAL CHEMISTRY ACCOUNTS, 2009, 124 (5-6) :319-330
[30]   Investigations of an O-H•••S Hydrogen Bond via Car-Parrinello and Path Integral Molecular Dynamics [J].
Jezierska, Aneta ;
Panek, Jaroslaw J. .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2009, 30 (08) :1241-1250