Phage satellites and their emerging applications in biotechnology

被引:25
作者
Ibarra-Chavez, Rodrigo [1 ]
Hansen, Mads Frederik [1 ,2 ]
Pinilla-Redondo, Rafael [1 ]
Seed, Kimberley D. [3 ,4 ]
Trivedi, Urvish [1 ]
机构
[1] Univ Copenhagen, Dept Biol, Sect Microbiol, DK-2100 Copenhagen, Denmark
[2] Max Planck Inst Terr Microbiol, D-35043 Marburg, Germany
[3] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
[4] Chan Zuckerberg Biohub, San Francisco, CA 94158 USA
关键词
phage satellites; SynBio; mobile genetic elements; phage-inducible chromosomal islands; virulence; molecular piracy; CAPSID-SIZE DETERMINATION; PATHOGENICITY ISLAND INTERFERENCE; MOBILE GENETIC ELEMENTS; CRISPR-CAS SYSTEMS; STAPHYLOCOCCUS-AUREUS; HOST-RANGE; PSEUDOMONAS-AERUGINOSA; BACTERIOPHAGE P4; BIOINFORMATIC ANALYSIS; CHROMOSOMAL ISLANDS;
D O I
10.1093/femsre/fuab031
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The arms race between (bacterio)phages and their hosts is a recognised hot spot for genome evolution. Indeed, phages and their components have historically paved the way for many molecular biology techniques and biotech applications. Further exploration into their complex lifestyles has revealed that phages are often parasitised by distinct types of hyperparasitic mobile genetic elements. These so-called phage satellites exploit phages to ensure their own propagation and horizontal transfer into new bacterial hosts, and their prevalence and peculiar lifestyle has caught the attention of many researchers. Here, we review the parasite-host dynamics of the known phage satellites, their genomic organisation and their hijacking mechanisms. Finally, we discuss how these elements can be repurposed for diverse biotech applications, kindling a new catalogue of exciting tools for microbiology and synthetic biology.
引用
收藏
页数:20
相关论文
共 168 条
  • [81] A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
    Kauffman, Kathryn M.
    Hussain, Fatima A.
    Yang, Joy
    Arevalo, Philip
    Brown, Julia M.
    Chang, William K.
    VanInsberghe, David
    Elsherbini, Joseph
    Sharma, Radhey S.
    Cutler, Michael B.
    Kelly, Libusha
    Polz, Martin F.
    [J]. NATURE, 2018, 554 (7690) : 118 - +
  • [82] Development of CRISPR-Cas13a-based antimicrobials capable of sequence-specific killing of target bacteria
    Kiga, Kotaro
    Tan, Xin-Ee
    Ibarra-Chavez, Rodrigo
    Watanabe, Shinya
    Aiba, Yoshifumi
    Sato'o, Yusuke
    Li, Feng-Yu
    Sasahara, Teppei
    Cui, Bintao
    Kawauchi, Moriyuki
    Boonsiri, Tanit
    Thitiananpakorn, Kanate
    Taki, Yusuke
    Azam, Aa Haeruman
    Suzuki, Masato
    Penades, Jose R.
    Cui, Longzhu
    [J]. NATURE COMMUNICATIONS, 2020, 11 (01)
  • [83] Cross-genus rebooting of custom-made, synthetic bacteriophage genomes in L-form bacteria
    Kilcher, Samuel
    Studer, Patrick
    Muessner, Christina
    Klumpp, Jochen
    Loessner, Martin J.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (03) : 567 - 572
  • [84] Structure of the Capsid Size-Determining Scaffold of "Satellite" Bacteriophage P4
    Kizziah, James L.
    Rodenburg, Cynthia M.
    Dokland, Terje
    [J]. VIRUSES-BASEL, 2020, 12 (09):
  • [85] Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
    Klumper, Uli
    Riber, Leise
    Dechesne, Arnaud
    Sannazzarro, Analia
    Hansen, Lars H.
    Sorensen, Soren J.
    Smets, Barth F.
    [J]. ISME JOURNAL, 2015, 9 (04) : 934 - 945
  • [86] Cooperation and virulence of clinical Pseudomonas aeruginosa populations
    Koehler, Thilo
    Buckling, Angus
    van Delden, Christian
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (15) : 6339 - 6344
  • [87] Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire
    Koonin, Eugene V.
    Makarova, Kira S.
    Wolf, Yuri I.
    Krupovic, Mart
    [J]. NATURE REVIEWS GENETICS, 2020, 21 (02) : 119 - 131
  • [88] Programmable bacteria detect and record an environmental signal in the mammalian gut
    Kotula, Jonathan W.
    Kerns, S. Jordan
    Shaket, Lev A.
    Siraj, Layla
    Collins, James J.
    Way, Jeffrey C.
    Silver, Pamela A.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (13) : 4838 - 4843
  • [89] Bacterial genome engineering and synthetic biology: combating pathogens
    Krishnamurthy, Malathy
    Moore, Richard T.
    Rajamani, Sathish
    Panchal, Rekha G.
    [J]. BMC MICROBIOLOGY, 2016, 16 : 1 - 11
  • [90] Engineered Phagemids for Nonlytic, Targeted Antibacterial Therapies
    Krom, Russell J.
    Bhargava, Prerna
    Lobritz, Michael A.
    Collins, James J.
    [J]. NANO LETTERS, 2015, 15 (07) : 4808 - 4813