Phage satellites and their emerging applications in biotechnology

被引:25
作者
Ibarra-Chavez, Rodrigo [1 ]
Hansen, Mads Frederik [1 ,2 ]
Pinilla-Redondo, Rafael [1 ]
Seed, Kimberley D. [3 ,4 ]
Trivedi, Urvish [1 ]
机构
[1] Univ Copenhagen, Dept Biol, Sect Microbiol, DK-2100 Copenhagen, Denmark
[2] Max Planck Inst Terr Microbiol, D-35043 Marburg, Germany
[3] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA
[4] Chan Zuckerberg Biohub, San Francisco, CA 94158 USA
关键词
phage satellites; SynBio; mobile genetic elements; phage-inducible chromosomal islands; virulence; molecular piracy; CAPSID-SIZE DETERMINATION; PATHOGENICITY ISLAND INTERFERENCE; MOBILE GENETIC ELEMENTS; CRISPR-CAS SYSTEMS; STAPHYLOCOCCUS-AUREUS; HOST-RANGE; PSEUDOMONAS-AERUGINOSA; BACTERIOPHAGE P4; BIOINFORMATIC ANALYSIS; CHROMOSOMAL ISLANDS;
D O I
10.1093/femsre/fuab031
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The arms race between (bacterio)phages and their hosts is a recognised hot spot for genome evolution. Indeed, phages and their components have historically paved the way for many molecular biology techniques and biotech applications. Further exploration into their complex lifestyles has revealed that phages are often parasitised by distinct types of hyperparasitic mobile genetic elements. These so-called phage satellites exploit phages to ensure their own propagation and horizontal transfer into new bacterial hosts, and their prevalence and peculiar lifestyle has caught the attention of many researchers. Here, we review the parasite-host dynamics of the known phage satellites, their genomic organisation and their hijacking mechanisms. Finally, we discuss how these elements can be repurposed for diverse biotech applications, kindling a new catalogue of exciting tools for microbiology and synthetic biology.
引用
收藏
页数:20
相关论文
共 168 条
  • [61] New Applications for Phage Integrases
    Fogg, Paul C. M.
    Colloms, Sean
    Rosser, Susan
    Stark, Marshall
    Smith, Margaret C. M.
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2014, 426 (15) : 2703 - 2716
  • [62] Importance of prophages to evolution and virulence of bacterial pathogens
    Fortier, Louis-Charles
    Sekulovic, Ognjen
    [J]. VIRULENCE, 2013, 4 (05) : 354 - 365
  • [63] Virus Satellites Drive Viral Evolution and Ecology
    Frigols, Belen
    Quiles-Puchalt, Nuria
    Mir-Sanchis, Ignacio
    Donderis, Jorge
    Elena, Santiago F.
    Buckling, Angus
    Novick, Richard P.
    Marina, Alberto
    Penades, Jose R.
    [J]. PLOS GENETICS, 2015, 11 (10):
  • [64] Mobile genetic elements: The agents of open source evolution
    Frost, LS
    Leplae, R
    Summers, AO
    Toussaint, A
    [J]. NATURE REVIEWS MICROBIOLOGY, 2005, 3 (09) : 722 - 732
  • [65] LASR OF PSEUDOMONAS-AERUGINOSA IS A TRANSCRIPTIONAL ACTIVATOR OF THE ALKALINE PROTEASE GENE (APR) AND AN ENHANCER OF EXOTOXIN-A EXPRESSION
    GAMBELLO, MJ
    KAYE, S
    IGLEWSKI, BH
    [J]. INFECTION AND IMMUNITY, 1993, 61 (04) : 1180 - 1184
  • [66] Control of phage Bxb1 excision by a novel recombination directionality factor
    Ghosh, Pallavi
    Wasil, Laura R.
    Hatfull, Graham F.
    [J]. PLOS BIOLOGY, 2006, 4 (06): : 964 - 974
  • [67] Gordillo Altamirano FL, 2020, NAT MICROBIOL, P1
  • [68] Pathogenicity islands: Bacterial evolution in quantum leaps
    Groisman, EA
    Ochman, H
    [J]. CELL, 1996, 87 (05) : 791 - 794
  • [69] Efficient inter-species conjugative transfer of a CRISPR nuclease for targeted bacterial killing
    Hamilton, Thomas A.
    Pellegrino, Gregory M.
    Therrien, Jasmine A.
    Ham, Dalton T.
    Bartlett, Peter C.
    Karas, Bogumil J.
    Gloor, Gregory B.
    Edgell, David R.
    [J]. NATURE COMMUNICATIONS, 2019, 10 (1)
  • [70] Pathogenicity Islands PAPI-1 and PAPI-2 Contribute Individually and Synergistically to the Virulence of Pseudomonas aeruginosa Strain PA14
    Harrison, Ewan M.
    Carter, Melissa E. K.
    Luck, Shelley
    Ou, Hong-Yu
    He, Xinyi
    Deng, Zixin
    O'Callaghan, Chris
    Kadioglu, Aras
    Rajakumar, Kumar
    [J]. INFECTION AND IMMUNITY, 2010, 78 (04) : 1437 - 1446