Regulation of plant architecture by a new histone acetyltransferase targeting gene bodies

被引:55
作者
Yang, Xueyong [1 ]
Yan, Jianbin [2 ]
Zhang, Zhen [3 ,4 ]
Lin, Tao [2 ]
Xin, Tongxu [1 ]
Wang, Bowen [2 ]
Wang, Shenhao [3 ]
Zhao, Jicheng [5 ]
Zhang, Zhonghua [1 ]
Lucas, William J. [6 ]
Li, Guohong [5 ]
Huang, Sanwen [2 ]
机构
[1] Chinese Acad Agr Sci, Inst Vegetables & Flowers, Sino Dutch Joint Lab Hort Genom, Minist Agr,Key Lab Biol & Genet Improvement Hort, Beijing, Peoples R China
[2] Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Minist Agr,Genome Anal Lab, Shenzhen Branch,Guangdong Lab Lingnan Modern Agr, Shenzhen, Peoples R China
[3] Northwest A&F Univ, Coll Hort, Yangling, Shaanxi, Peoples R China
[4] Henan Univ, Sch Life Sci, State Key Lab Crop Stress Adaptat & Improvement, Kaifeng, Peoples R China
[5] Chinese Acad Sci, Inst Biophys, CAS Ctr Excellence Biomacromol, Univ Chinese Acad Sci,Natl Lab Biomacromol, Beijing, Peoples R China
[6] Univ Calif Davis, Coll Biol Sci, Dept Plant Biol, Davis, CA 95616 USA
基金
中国国家自然科学基金;
关键词
H3; K56; ACETYLATION; TRANSCRIPTION; CHROMATIN; CORE; NUCLEOSOME; LYSINE-56; SEQ; ELONGATION; EXPRESSION;
D O I
10.1038/s41477-020-0715-2
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The cucumber TCP transcription factor TEN regulates tendril identity by acting as both an intragenic enhancer-binding protein and a non-canonical histone acetyltransferase that modifies histones, loosens chromatin and thus activates target genes. Axillary meristem development determines both plant architecture and crop yield; this critical process is regulated by the PROLIFERATING CELL FACTORS (TCP) family of transcription factors. Although TCP proteins bind primarily to promoter regions, some also target gene bodies for expression activation. However, the underlying regulatory mechanism remains unknown. Here we show that TEN, a TCP from cucumber (Cucumis sativusL.), controls the identity and mobility of tendrils. Through its C terminus, TEN binds at intragenic enhancers of target genes; its N-terminal domain functions as a non-canonical histone acetyltransferase (HAT) to preferentially act on lysine 56 and 122 of the histone H3 globular domain. This HAT activity is responsible for chromatin loosening and host-gene activation. The N termini of all tested CYCLOIDEA and TEOSINTE BRANCHED 1-like TCP proteins contain an intrinsically disordered region; despite their sequence divergence, they have conserved HAT activity. This study identifies a non-canonical class of HATs and provides a mechanism by which modification at the H3 globular domain is integrated with the transcription process.
引用
收藏
页码:809 / +
页数:28
相关论文
共 63 条
[1]   Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds [J].
Aguilar-Martinez, Jose Antonio ;
Poza-Carrion, Cesar ;
Cubas, Pilar .
PLANT CELL, 2007, 19 (02) :458-472
[2]   MEME: discovering and analyzing DNA and protein sequence motifs [J].
Bailey, Timothy L. ;
Williams, Nadya ;
Misleh, Chris ;
Li, Wilfred W. .
NUCLEIC ACIDS RESEARCH, 2006, 34 :W369-W373
[3]   Molecular functions of the histone acetyltransferase chaperone complex Rtt109-Vps75 [J].
Berndsen, Christopher E. ;
Tsubota, Toshiaki ;
Lindner, Scott E. ;
Lee, Susan ;
Holton, James M. ;
Kaufman, Paul D. ;
Keck, James L. ;
Denu, John M. .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2008, 15 (09) :948-956
[4]  
Bhattacharjee Tapomoy, 2019, INFERRINGCAUSATIONFR, V10, DOI [10.1038/s41467-019-10115-1, DOI 10.1038/S41467.019.10105.3]
[5]   Going the distance: A current view of enhancer action [J].
Blackwood, EM ;
Kadonaga, JT .
SCIENCE, 1998, 281 (5373) :60-63
[6]   F-Seq: a feature density estimator for high-throughput sequence tags [J].
Boyle, Alan P. ;
Guinney, Justin ;
Crawford, Gregory E. ;
Furey, Terrence S. .
BIOINFORMATICS, 2008, 24 (21) :2537-2538
[7]   Genome-wide analysis of estrogen receptor binding sites [J].
Carroll, Jason S. ;
Meyer, Clifford A. ;
Song, Jun ;
Li, Wei ;
Geistlinger, Timothy R. ;
Eeckhoute, Jerome ;
Brodsky, Alexander S. ;
Keeton, Erika Krasnickas ;
Fertuck, Kirsten C. ;
Hall, Giles F. ;
Wang, Qianben ;
Bekiranov, Stefan ;
Sementchenko, Victor ;
Fox, Edward A. ;
Silver, Pamela A. ;
Gingeras, Thomas R. ;
Liu, X. Shirley ;
Brown, Myles .
NATURE GENETICS, 2006, 38 (11) :1289-1297
[8]   Acetylated lysine 56 on histone H3 drives chromatin assembly after repair and signals for the completion of repair [J].
Chen, Chin-Chuan ;
Carson, Joshua J. ;
Feser, Jason ;
Tamburini, Beth ;
Zabaronick, Susan ;
Linger, Jeffrey ;
Tyler, Jessica K. .
CELL, 2008, 134 (02) :231-243
[9]   CRISPR/Cas9-mediated base-editing system efficiently generates gain-of-function mutations in Arabidopsis [J].
Chen, Yiyu ;
Wang, Zhiping ;
Ni, Hanwen ;
Xu, Yong ;
Chen, Qijun ;
Jiang, Linjian .
SCIENCE CHINA-LIFE SCIENCES, 2017, 60 (05) :520-523
[10]   CBP/p300-mediated acetylation of histone H3 on lysine 56 [J].
Das, Chandrima ;
Lucia, M. Scott ;
Hansen, Kirk C. ;
Tyler, Jessica K. .
NATURE, 2009, 459 (7243) :113-U123