CodonO: codon usage bias analysis within and across genomes

被引:109
作者
Angellotti, Michael C. [1 ]
Bhuiyan, Shafquat B. [1 ]
Chen, Guorong [1 ]
Wan, Xiu-Feng [1 ]
机构
[1] Miami Univ, Dept Microbiol, Syst Biol Lab, Oxford, OH 45056 USA
关键词
ESCHERICHIA-COLI; GENE; SELECTION; SEQUENCES;
D O I
10.1093/nar/gkm392
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Synonymous codon usage biases are associated with various biological factors, such as gene expression level, gene length, gene translation initiation signal, protein amino acid composition, protein structure, tRNA abundance, mutation frequency and patterns, and GC compositions. Quantification of codon usage bias helps understand evolution of living organisms. A codon usage bias pipeline is demanding for codon usage bias analyses within and across genomes. Here we present a CodonO webserver service as a user-friendly tool for codon usage bias analyses across and within genomes in real time. The webserver is available at http//www.sysbiology.org/CodonO. Contact: wanhenry@yahoo.com.
引用
收藏
页码:W132 / W136
页数:5
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