MDRView: a visualization of the polymorphisms of MDR1(ABCB1) GENE in breast cancer

被引:0
作者
Xhemo, Edlira [1 ]
Fajac, Anne [2 ]
Boire, Jean-Yves [3 ]
Levy, Pierre P. [4 ,5 ,6 ]
机构
[1] Tenon Hosp, Dept Publ Hlth, Paris, France
[2] Tenon Hosp, Histol Dept, F-75020 Paris, France
[3] ERIM, Fac Med, F-63001 Clermont Ferrand 1, France
[4] Tenon Hosp, AP HP, Dept Publ Hlth, F-75970 Paris 20, France
[5] Univ Paris 06, Inserm UMR S 707, F-75012 Paris, France
[6] INSERM, UMR S707, F-75012 Paris, France
来源
2007 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-16 | 2007年
关键词
MDR1; ABCB1; polymorphism; visualization; data base; infoxel; generalized CaseView;
D O I
暂无
中图分类号
R318 [生物医学工程];
学科分类号
0831 ;
摘要
This paper presents the Generalized CaseView method applied to the study of polymorphisms of MDR1 (Multi Drug Resistant), a gene coding for a trans-membrane transporting protein. The data base contains Single nucleotide polymorphisms, their positions in cDNA, and the Area Under the Curve of drugs concentrations. The generalized CaseView method permits a compact visualization of these data. The main result is that pharmacokinetics of some anticancer drugs depends on the genotype.
引用
收藏
页码:4592 / +
页数:2
相关论文
共 11 条
[1]  
GLIGOROV J, 2007, 98 AM ASS CANC RES A
[2]  
GLIGOROV J, 2006, 97 AM ASS CANC RES A
[3]   Deciphering cellular states of innate tumor drug responses [J].
Graudens, E ;
Boulanger, V ;
Mollard, C ;
Mariage-Samson, R ;
Barlet, X ;
Grémy, G ;
Couillault, C ;
Lajémi, M ;
Piatier-Tonneau, D ;
Zaborski, P ;
Eveno, E ;
Auffray, C ;
Imbeaud, S .
GENOME BIOLOGY, 2006, 7 (03)
[4]   Sequence diversity and haplotype structure in the human ABCB1 (MDR1, multidrug resistance transporter) gene [J].
Kroetz, DL ;
Pauli-Magnus, C ;
Hodges, LM ;
Huang, CC ;
Kawamoto, M ;
Johns, SJ ;
Stryke, D ;
Ferrin, TE ;
DeYoung, J ;
Taylor, T ;
Carlson, EJ ;
Herskowitz, I ;
Giacomini, KM ;
Clark, AG .
PHARMACOGENETICS, 2003, 13 (08) :481-494
[5]  
Lévy PP, 2007, LECT NOTES COMPUT SC, V4370, P3
[6]   The case view, a generic method of visualization of the case mix [J].
Lévy, PP .
INTERNATIONAL JOURNAL OF MEDICAL INFORMATICS, 2004, 73 (9-10) :713-718
[7]  
LEVY PP, 2005, ICPCVIEW VISUALIZING, P623
[8]   An interactive tool for visualization of relationships between gene expression profiles [J].
Ruzanov, P ;
Jones, SJM .
BMC BIOINFORMATICS, 2006, 7 (1)
[9]   Ensemble attribute profile clustering: discovering and characterizing groups of genes with similar patterns of biological features [J].
Semeiks, JR ;
Rizki, A ;
Bissell, MJ ;
Mian, IS .
BMC BIOINFORMATICS, 2006, 7 (1)
[10]   A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome [J].
Small, Kerrin S. ;
Brudno, Michael ;
Hill, Matthew M. ;
Sidow, Arend .
GENOME BIOLOGY, 2007, 8 (03)