Subgraphs and network motifs in geometric networks

被引:46
作者
Itzkovitz, S [1 ]
Alon, U
机构
[1] Weizmann Inst Sci, Dept Mol Cell Biol, IL-76100 Rehovot, Israel
[2] Weizmann Inst Sci, Dept Phys Complex Syst, IL-76100 Rehovot, Israel
关键词
D O I
10.1103/PhysRevE.71.026117
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Many real-world networks describe systems in which interactions decay with the distance between nodes. Examples include systems constrained in real space such as transportation and communication networks, as well as systems constrained in abstract spaces such as multivariate biological or economic data sets and models of social networks. These networks often display network motifs: subgraphs that recur in the network much more often than in randomized networks. To understand the origin of the network motifs in these networks, it is important to study the subgraphs and network motifs that arise solely from geometric constraints. To address this, we analyze geometric network models, in which nodes are arranged on a lattice and edges are formed with a probability that decays with the distance between nodes. We present analytical solutions for the numbers of all three- and four-node subgraphs, in both directed and nondirected geometric networks. We also analyze geometric networks with arbitrary degree sequences and models with a bias for directed edges in one direction. Scaling rules for scaling of subgraph numbers with system size, lattice dimension, and interaction range are given. Several invariant measures are found, such as the ratio of feedback and feed-forward loops, which do not depend on system size, dimension, or connectivity function. We find that network motifs in many real-world networks, including social networks and neuronal networks, are not captured solely by these geometric models. This is in line with recent evidence that biological network motifs were selected as basic circuit elements with defined information-processing functions.
引用
收藏
页数:9
相关论文
共 69 条
[1]   Statistical mechanics of complex networks [J].
Albert, R ;
Barabási, AL .
REVIEWS OF MODERN PHYSICS, 2002, 74 (01) :47-97
[2]   Biological networks: The tinkerer as an engineer [J].
Alon, U .
SCIENCE, 2003, 301 (5641) :1866-1867
[3]  
BANAVAR JR, NATURE LONDON, V13, P399
[4]  
BANAVAR JR, 1999, NATURE, V13, P130
[5]   Emergence of scaling in random networks [J].
Barabási, AL ;
Albert, R .
SCIENCE, 1999, 286 (5439) :509-512
[6]   Crossover from scale-free to spatial networks [J].
Barthélemy, M .
EUROPHYSICS LETTERS, 2003, 63 (06) :915-921
[7]   Spatiotemporal control of gene expression with pulse-generating networks [J].
Basu, S ;
Mehreja, R ;
Thiberge, S ;
Chen, MT ;
Weiss, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (17) :6355-6360
[8]   Correlated random networks -: art. no. 228701 [J].
Berg, J ;
Lässig, M .
PHYSICAL REVIEW LETTERS, 2002, 89 (22) :228701-228701
[9]  
BIANCONI G, CONDMAT0408349
[10]  
Bollobas B., 2001, CAMBRIDGE STUDIES AD, V73