A single-cell atlas of human and mouse white adipose tissue

被引:371
作者
Emont, Margo P. [1 ,2 ]
Jacobs, Christopher [1 ,2 ]
Essene, Adam L. [1 ]
Pant, Deepti [1 ]
Tenen, Danielle [1 ,2 ]
Colleluori, Georgia [3 ]
Di Vincenzo, Angelica [3 ]
Jorgensen, Anja M. [4 ]
Dashti, Hesam [2 ]
Stefek, Adam [2 ]
McGonagle, Elizabeth [2 ]
Strobel, Sophie [2 ]
Laber, Samantha [2 ]
Agrawal, Saaket [2 ,5 ]
Westcott, Gregory P. [1 ]
Kar, Amrita [1 ,2 ]
Veregge, Molly L. [1 ]
Gulko, Anton [1 ]
Srinivasan, Harini [1 ,2 ]
Kramer, Zachary [1 ]
De Filippis, Eleanna [6 ]
Merkel, Erin [1 ]
Ducie, Jennifer [7 ]
Boyd, Christopher G. [8 ]
Gourash, William [9 ]
Courcoulas, Anita [9 ]
Lin, Samuel J. [10 ]
Lee, Bernard T. [10 ]
Morris, Donald [10 ]
Tobias, Adam [10 ]
Khera, Amit, V [2 ,5 ,11 ]
Claussnitzer, Melina [2 ,12 ,13 ]
Pers, Tune H. [4 ]
Giordano, Antonio [3 ]
Ashenberg, Orr [14 ]
Regev, Aviv [14 ,15 ,16 ]
Tsai, Linus T. [1 ,2 ,11 ]
Rosen, Evan D. [1 ,2 ,11 ]
机构
[1] Beth Israel Deaconess Med Ctr, Div Endocrinol Diabet & Metab, Boston, MA 02215 USA
[2] Broad Inst MIT & Harvard, Cambridge, MA 02142 USA
[3] Marche Polytech Univ, Ctr Obes, Dept Expt & Clin Med, Ancona, Italy
[4] Univ Copenhagen, Novo Nordisk Fdn Ctr Basic Metab Res, Copenhagen, Denmark
[5] Massachusetts Gen Hosp, Dept Med, Ctr Genom Med, Boston, MA 02114 USA
[6] Mayo Clin Scottsdale, Div Endocrinol Diabet & Metab, Scottsdale, AZ USA
[7] Beth Israel Deaconess Med Ctr, Div Gynecol Oncol, Dept Obstet & Gynecol, Boston, MA 02215 USA
[8] Beth Israel Deaconess Med Ctr, Dept Surg, 330 Brookline Ave, Boston, MA 02215 USA
[9] Univ Pittsburgh, Ctr Hlth, Dept Surg, Pittsburgh, PA USA
[10] Beth Israel Deaconess Med Ctr, Dept Surg, Div Plast Surg, 330 Brookline Ave, Boston, MA 02215 USA
[11] Harvard Med Sch, Boston, MA 02115 USA
[12] Massachusetts Gen Hosp, Diabet Unit, Boston, MA 02114 USA
[13] Massachusetts Gen Hosp, Ctr Genom Med, Boston, MA 02114 USA
[14] Broad Inst MIT & Harvard, Klarman Cell Observ, Cambridge, MA 02142 USA
[15] MIT, Dept Biol, Koch Inst Integrat Canc Res, Howard Hughes Med Inst,Koch Inst Integrat Canc Re, Cambridge, MA USA
[16] Genentech Inc, San Francisco, CA 94080 USA
关键词
GENOME-WIDE ASSOCIATION; DIET-INDUCED OBESITY; INSULIN-RESISTANCE; GENETIC-LOCI; CROSS-TALK; SENSITIVITY; HOMEOSTASIS; GLUCOSE; IMPACT;
D O I
10.1038/s41586-022-04518-2
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
White adipose tissue, once regarded as morphologically and functionally bland, is now recognized to be dynamic, plastic and heterogenous, and is involved in a wide array of biological processes including energy homeostasis, glucose and lipid handling, blood pressure control and host defence(1). High-fat feeding and other metabolic stressors cause marked changes in adipose morphology, physiology and cellular composition(1), and alterations in adiposity are associated with insulin resistance, dyslipidemia and type 2 diabetes(2). Here we provide detailed cellular atlases of human and mouse subcutaneous and visceral white fat at single-cell resolution across a range of body weight. We identify subpopulations of adipocytes, adipose stem and progenitor cells, vascular and immune cells and demonstrate commonalities and differences across species and dietary conditions. We link specific cell types to increased risk of metabolic disease and provide an initial blueprint for a comprehensive set of interactions between individual cell types in the adipose niche in leanness and obesity. These data comprise an extensive resource for the exploration of genes, traits and cell types in the function of white adipose tissue across species, depots and nutritional conditions.
引用
收藏
页码:926 / +
页数:32
相关论文
共 80 条
  • [61] New genetic loci link adipose and insulin biology to body fat distribution
    Shungin, Dmitry
    Winkler, Thomas W.
    Croteau-Chonka, Damien C.
    Ferreira, Teresa
    Lockes, Adam E.
    Maegi, Reedik
    Strawbridge, Rona J.
    Pers, Tune H.
    Fischer, Krista
    Justice, Anne E.
    Workalemahu, Tsegaselassie
    Wu, Joseph M. W.
    Buchkovich, Martin L.
    Heard-Costa, Nancy L.
    Roman, Tamara S.
    Drong, Alexander W.
    Song, Ci
    Gustafsson, Stefan
    Day, Felix R.
    Esko, Tonu
    Fall, Tove
    Kutalik, Zoltan
    Luan, Jian'an
    Randall, Joshua C.
    Scherag, Andre
    Vedantam, Sailaja
    Wood, Andrew R.
    Chen, Jin
    Fehrmann, Rudolf
    Karjalainen, Juha
    Kahali, Bratati
    Liu, Ching-Ti
    Schmidt, Ellen M.
    Absher, Devin
    Amin, Najaf
    Anderson, Denise
    Beekman, Marian
    Bragg-Gresham, Jennifer L.
    Buyske, Steven
    Demirkan, Ayse
    Ehret, Georg B.
    Feitosa, Mary F.
    Goel, Anuj
    Jackson, Anne U.
    Johnson, Toby
    Kleber, Marcus E.
    Kristiansson, Kati
    Mangino, Massimo
    Leach, Irene Mateo
    Medina-Gomez, Carolina
    [J]. NATURE, 2015, 518 (7538) : 187 - U378
  • [62] A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
    Slyper, Michal
    Porter, Caroline B. M.
    Ashenberg, Orr
    Waldman, Julia
    Drokhlyansky, Eugene
    Wakiro, Isaac
    Smillie, Christopher
    Smith-Rosario, Gabriela
    Wu, Jingyi
    Dionne, Danielle
    Vigneau, Sebastien
    Jane-Valbuena, Judit
    Tickle, Timothy L.
    Napolitano, Sara
    Su, Mei-Ju
    Patel, Anand G.
    Karlstrom, Asa
    Gritsch, Simon
    Nomura, Masashi
    Waghray, Avinash
    Gohil, Satyen H.
    Tsankov, Alexander M.
    Jerby-Arnon, Livnat
    Cohen, Ofir
    Klughammer, Johanna
    Rosen, Yanay
    Gould, Joshua
    Lan Nguyen
    Hofree, Matan
    Tramontozzi, Peter J.
    Li, Bo
    Wu, Catherine J.
    Izar, Benjamin
    Haq, Rizwan
    Hodi, F. Stephen
    Yoon, Charles H.
    Hata, Aaron N.
    Baker, Suzanne J.
    Suva, Mario L.
    Bueno, Raphael
    Stover, Elizabeth H.
    Clay, Michael R.
    Dyer, Michael A.
    Collins, Natalie B.
    Matulonis, Ursula A.
    Wagle, Nikhil
    Johnson, Bruce E.
    Rotem, Asaf
    Rozenblatt-Rosen, Orit
    Regev, Aviv
    [J]. NATURE MEDICINE, 2020, 26 (05) : 792 - +
  • [63] Soneson Charlotte, 2015, F1000Res, V4, P1521, DOI 10.12688/f1000research.7563.2
  • [64] Alignment and mapping methodology influence transcript abundance estimation
    Srivastava, Avi
    Malik, Laraib
    Sarkar, Hirak
    Zakeri, Mohsen
    Almodaresi, Fatemeh
    Soneson, Charlotte
    Love, Michael I.
    Kingsford, Carl
    Patro, Rob
    [J]. GENOME BIOLOGY, 2020, 21 (01)
  • [65] Stefan N, 2010, DIABETES CARE, V33, P405, DOI [10.2337/dc09-0544, 10.2337/dc10-0002]
  • [66] Comprehensive Integration of Single-Cell Data
    Stuart, Tim
    Butler, Andrew
    Hoffman, Paul
    Hafemeister, Christoph
    Papalexi, Efthymia
    Mauck, William M., III
    Hao, Yuhan
    Stoeckius, Marlon
    Smibert, Peter
    Satija, Rahul
    [J]. CELL, 2019, 177 (07) : 1888 - +
  • [67] UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age
    Sudlow, Cathie
    Gallacher, John
    Allen, Naomi
    Beral, Valerie
    Burton, Paul
    Danesh, John
    Downey, Paul
    Elliott, Paul
    Green, Jane
    Landray, Martin
    Liu, Bette
    Matthews, Paul
    Ong, Giok
    Pell, Jill
    Silman, Alan
    Young, Alan
    Sprosen, Tim
    Peakman, Tim
    Collins, Rory
    [J]. PLOS MEDICINE, 2015, 12 (03)
  • [68] Adipose tissue macrophages: their role in adipose tissue remodeling
    Suganami, Takayoshi
    Ogawa, Yoshihiro
    [J]. JOURNAL OF LEUKOCYTE BIOLOGY, 2010, 88 (01) : 33 - 39
  • [69] snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis
    Sun, Wenfei
    Dong, Hua
    Balaz, Miroslav
    Slyper, Michal
    Drokhlyansky, Eugene
    Colleluori, Georgia
    Giordano, Antonio
    Kovanicova, Zuzana
    Stefanicka, Patrik
    Balazova, Lucia
    Ding, Lianggong
    Husted, Anna Sofie
    Rudofsky, Gottfried
    Ukropec, Jozef
    Cinti, Saverio
    Schwartz, Thue W.
    Regev, Aviv
    Wolfrum, Christian
    [J]. NATURE, 2020, 587 (7832) : 98 - +
  • [70] Biological, clinical and population relevance of 95 loci for blood lipids
    Teslovich, Tanya M.
    Musunuru, Kiran
    Smith, Albert V.
    Edmondson, Andrew C.
    Stylianou, Ioannis M.
    Koseki, Masahiro
    Pirruccello, James P.
    Ripatti, Samuli
    Chasman, Daniel I.
    Willer, Cristen J.
    Johansen, Christopher T.
    Fouchier, Sigrid W.
    Isaacs, Aaron
    Peloso, Gina M.
    Barbalic, Maja
    Ricketts, Sally L.
    Bis, Joshua C.
    Aulchenko, Yurii S.
    Thorleifsson, Gudmar
    Feitosa, Mary F.
    Chambers, John
    Orho-Melander, Marju
    Melander, Olle
    Johnson, Toby
    Li, Xiaohui
    Guo, Xiuqing
    Li, Mingyao
    Cho, Yoon Shin
    Go, Min Jin
    Kim, Young Jin
    Lee, Jong-Young
    Park, Taesung
    Kim, Kyunga
    Sim, Xueling
    Ong, Rick Twee-Hee
    Croteau-Chonka, Damien C.
    Lange, Leslie A.
    Smith, Joshua D.
    Song, Kijoung
    Zhao, Jing Hua
    Yuan, Xin
    Luan, Jian'an
    Lamina, Claudia
    Ziegler, Andreas
    Zhang, Weihua
    Zee, Robert Y. L.
    Wright, Alan F.
    Witteman, Jacqueline C. M.
    Wilson, James F.
    Willemsen, Gonneke
    [J]. NATURE, 2010, 466 (7307) : 707 - 713