Vibrational Relaxation and Energy Migration of N-Methylacetamide in Water: The Role of Non bonded Interactions

被引:11
作者
Cazade, Pierre-Andre [1 ]
Hedin, Florent [1 ]
Xu, Zhen-Hao [1 ]
Meuwly, Markus [1 ]
机构
[1] Univ Basel, Dept Chem, CH-4056 Basel, Switzerland
基金
瑞士国家科学基金会;
关键词
MOLECULAR-DYNAMICS SIMULATIONS; 2-DIMENSIONAL INFRARED-SPECTROSCOPY; AMIDE-I BAND; CARBONMONOXY MYOGLOBIN; POPULATION RELAXATION; TRUNCATED HEMOGLOBIN; FORCE-FIELDS; PEPTIDES; SPECTRA; MODES;
D O I
10.1021/jp511701z
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Nonequilibrium molecular dynamics (MD) simulations together with physics-based force fields are used to follow energy flow between vibrationally excited N-methylacetamide (NMA) and water. The simulations are carried: out With a previously validated force field for NMA, based on a multipolar representation of the electrostatics, and with a new fluctuating point charge model. For the water solvent flexible and a rigid model was employed to distinguish between the role of inter, and intramolecular degrees, of freedom. On a 10 ps time scale about 90% of the available energy goes into the solvent. The remaining energy resides within internal NMA=degrees of freedom. from where energy flow takes place on longer time scales. The total amount, of energy transferred to the solvent on the 10 Ps time scale does not depend on whether the Water molecules are rigid or flexible during the simulations, Vibrational energy relaxation time scales include two regimes: one on the several 100 fs time scale and a longer one, ranging from 6 to 10 ps: This longer time scale agrees with previous simulations but overestimates the experimentally determined relaxation time by a factor of 2, which can be explained by the classical treatment Of the vibrations Including a previously determined quantum correction factor brings the long time scale:. into quite favorable agreement with experiment Coupling to the bending, Vibration Of the water molecules in H-bonding. contact with the excited C=O chromophore IS substantial. The equilibrium and nonequilibrium distribution of the bending angles of the Water molecules in:contact With the local oscillator are non Gaussian, and one approaches the other on the subpicosecond:time scale. Analysis Of the water velocity distribution suggests that the C=O vibrational energy relaxes into the solvent Water shells in. an impulsive fashion on a picosecond tithe scale
引用
收藏
页码:3112 / 3122
页数:11
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