Proteome analysis by mass spectrometry

被引:107
作者
Ferguson, PL [1 ]
Smith, RD [1 ]
机构
[1] Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA
来源
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE | 2003年 / 32卷
关键词
proteomics; FTICR; protein identification; chromatography; two-dimensional HPLC;
D O I
10.1146/annurev.biophys.32.110601.141854
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The coupling of high-performance mass spectrometry instrumentation with highly efficient chromatographic and electrophoretic separations has enabled rapid qualitative and quantitative analysis of thousands of proteins from minute samples of biological materials. Here, we review recent progress in the development and application of mass spectrometry-based techniques for the qualitative and quantitative analysis of global proteome samples derived from whole cells, tissues, or organisms. Techniques such as multidimensional peptide and protein separations coupled with mass spectrometry, accurate mass measurement of peptides from global proteome digests, and mass spectrometric characterization of intact proteins hold great promise for characterization of highly complex protein mixtures. Advances in chemical tagging and isotope labeling techniques have enabled quantitative analysis of proteomes, and highly specific isolation strategies have been developed aimed at selective analysis of posttranslationally modified proteins.
引用
收藏
页码:399 / 424
页数:26
相关论文
共 81 条
[51]   Proteomics to study genes and genomes [J].
Pandey, A ;
Mann, M .
NATURE, 2000, 405 (6788) :837-846
[52]   High throughput proteome-wide precision measurements of protein expression using mass spectrometry [J].
Pasa-Tolic, L ;
Jensen, PK ;
Anderson, GA ;
Lipton, MS ;
Peden, KK ;
Martinovic, S ;
Tolic, N ;
Bruce, JE ;
Smith, RD .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (34) :7949-7950
[53]   Signaling through scaffold, anchoring, and adaptor proteins [J].
Pawson, T ;
Scott, JD .
SCIENCE, 1997, 278 (5346) :2075-2080
[54]  
Perkins DN, 1999, ELECTROPHORESIS, V20, P3551, DOI 10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO
[55]  
2-2
[56]   QUANTITATIVE MONITORING OF GENE-EXPRESSION PATTERNS WITH A COMPLEMENTARY-DNA MICROARRAY [J].
SCHENA, M ;
SHALON, D ;
DAVIS, RW ;
BROWN, PO .
SCIENCE, 1995, 270 (5235) :467-470
[57]  
Shaffer SA, 1997, RAPID COMMUN MASS SP, V11, P1813
[58]   Packed capillary reversed-phase liquid chromatography with high-performance electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for proteomics [J].
Shen, YF ;
Zhao, R ;
Belov, ME ;
Conrads, TP ;
Anderson, GA ;
Tang, KQ ;
Pasa-Tolic, L ;
Veenstra, TD ;
Lipton, MS ;
Udseth, HR ;
Smith, RD .
ANALYTICAL CHEMISTRY, 2001, 73 (08) :1766-1775
[59]   High-throughput proteomics using high efficiency multiple-capillary liquid chromatography with on-line high-performance ESI FTICR mass spectrometry [J].
Shen, YF ;
Tolic, N ;
Zhao, R ;
Pasa-Tolic, L ;
Li, LJ ;
Berger, SJ ;
Harkewicz, R ;
Anderson, GA ;
Belov, ME ;
Smith, RD .
ANALYTICAL CHEMISTRY, 2001, 73 (13) :3011-3021
[60]   Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels [J].
Shevchenko, A ;
Jensen, ON ;
Podtelejnikov, AV ;
Sagliocco, F ;
Wilm, M ;
Vorm, O ;
Mortensen, P ;
Shevchenko, A ;
Boucherie, H ;
Mann, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (25) :14440-14445