共 81 条
Proteome analysis by mass spectrometry
被引:107
作者:

Ferguson, PL
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA

Smith, RD
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA
机构:
[1] Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA
来源:
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE
|
2003年
/
32卷
关键词:
proteomics;
FTICR;
protein identification;
chromatography;
two-dimensional HPLC;
D O I:
10.1146/annurev.biophys.32.110601.141854
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
The coupling of high-performance mass spectrometry instrumentation with highly efficient chromatographic and electrophoretic separations has enabled rapid qualitative and quantitative analysis of thousands of proteins from minute samples of biological materials. Here, we review recent progress in the development and application of mass spectrometry-based techniques for the qualitative and quantitative analysis of global proteome samples derived from whole cells, tissues, or organisms. Techniques such as multidimensional peptide and protein separations coupled with mass spectrometry, accurate mass measurement of peptides from global proteome digests, and mass spectrometric characterization of intact proteins hold great promise for characterization of highly complex protein mixtures. Advances in chemical tagging and isotope labeling techniques have enabled quantitative analysis of proteomes, and highly specific isolation strategies have been developed aimed at selective analysis of posttranslationally modified proteins.
引用
收藏
页码:399 / 424
页数:26
相关论文
共 81 条
[21]
Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses
[J].
Goshe, MB
;
Conrads, TP
;
Panisko, EA
;
Angell, NH
;
Veenstra, TD
;
Smith, RD
.
ANALYTICAL CHEMISTRY,
2001, 73 (11)
:2578-2586

Goshe, MB
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA

Conrads, TP
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA

Panisko, EA
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA

Angell, NH
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA

Veenstra, TD
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA

Smith, RD
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA Pacific NW Natl Lab, Environm & Mol Sci Lab, Richland, WA 99352 USA
[22]
Toward a high-throughput approach to quantitative proteomic analysis: Expression-dependent protein identification by mass spectrometry
[J].
Griffin, TJ
;
Han, DKM
;
Gygi, SP
;
Rist, B
;
Lee, H
;
Aebersold, R
;
Parker, KC
.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY,
2001, 12 (12)
:1238-1246

Griffin, TJ
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Han, DKM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Gygi, SP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Rist, B
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Lee, H
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Aebersold, R
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Parker, KC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA
[23]
Correlation between protein and mRNA abundance in yeast
[J].
Gygi, SP
;
Rochon, Y
;
Franza, BR
;
Aebersold, R
.
MOLECULAR AND CELLULAR BIOLOGY,
1999, 19 (03)
:1720-1730

Gygi, SP
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Rochon, Y
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Franza, BR
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Aebersold, R
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA
[24]
Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
[J].
Gygi, SP
;
Corthals, GL
;
Zhang, Y
;
Rochon, Y
;
Aebersold, R
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2000, 97 (17)
:9390-9395

Gygi, SP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Corthals, GL
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Zhang, Y
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Rochon, Y
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Aebersold, R
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA
[25]
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
[J].
Gygi, SP
;
Rist, B
;
Gerber, SA
;
Turecek, F
;
Gelb, MH
;
Aebersold, R
.
NATURE BIOTECHNOLOGY,
1999, 17 (10)
:994-999

Gygi, SP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Rist, B
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Gerber, SA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

论文数: 引用数:
h-index:
机构:

Gelb, MH
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA

Aebersold, R
论文数: 0 引用数: 0
h-index: 0
机构: Univ Washington, Dept Mol Biotechnol, Seattle, WA 98195 USA
[26]
Quantitative profiling of differentiation-induced microsomal proteins using isotope-coded affinity tags and mass spectrometry
[J].
Han, DK
;
Eng, J
;
Zhou, HL
;
Aebersold, R
.
NATURE BIOTECHNOLOGY,
2001, 19 (10)
:946-951

Han, DK
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98105 USA

Eng, J
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98105 USA

Zhou, HL
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98105 USA

Aebersold, R
论文数: 0 引用数: 0
h-index: 0
机构: Inst Syst Biol, Seattle, WA 98105 USA
[27]
ESI-FTICR mass spectrometry employing data-dependent external ion selection and accumulation
[J].
Harkewicz, R
;
Belov, ME
;
Anderson, GA
;
Pasa-Tolic, L
;
Masselon, CD
;
Prior, DC
;
Udseth, HR
;
Smith, RD
.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY,
2002, 13 (02)
:144-154

Harkewicz, R
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Belov, ME
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Anderson, GA
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Pasa-Tolic, L
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Masselon, CD
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Prior, DC
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Udseth, HR
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Smith, RD
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NE Natl Lab, Environm Mol Sci Lab, Richland, WA 99352 USA
[28]
IDENTIFYING PROTEINS FROM 2-DIMENSIONAL GELS BY MOLECULAR MASS SEARCHING OF PEPTIDE-FRAGMENTS IN PROTEIN-SEQUENCE DATABASES
[J].
HENZEL, WJ
;
BILLECI, TM
;
STULTS, JT
;
WONG, SC
;
GRIMLEY, C
;
WATANABE, C
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
1993, 90 (11)
:5011-5015

HENZEL, WJ
论文数: 0 引用数: 0
h-index: 0

BILLECI, TM
论文数: 0 引用数: 0
h-index: 0

STULTS, JT
论文数: 0 引用数: 0
h-index: 0

WONG, SC
论文数: 0 引用数: 0
h-index: 0

GRIMLEY, C
论文数: 0 引用数: 0
h-index: 0

WATANABE, C
论文数: 0 引用数: 0
h-index: 0
[29]
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
[J].
Ho, Y
;
Gruhler, A
;
Heilbut, A
;
Bader, GD
;
Moore, L
;
Adams, SL
;
Millar, A
;
Taylor, P
;
Bennett, K
;
Boutilier, K
;
Yang, LY
;
Wolting, C
;
Donaldson, I
;
Schandorff, S
;
Shewnarane, J
;
Vo, M
;
Taggart, J
;
Goudreault, M
;
Muskat, B
;
Alfarano, C
;
Dewar, D
;
Lin, Z
;
Michalickova, K
;
Willems, AR
;
Sassi, H
;
Nielsen, PA
;
Rasmussen, KJ
;
Andersen, JR
;
Johansen, LE
;
Hansen, LH
;
Jespersen, H
;
Podtelejnikov, A
;
Nielsen, E
;
Crawford, J
;
Poulsen, V
;
Sorensen, BD
;
Matthiesen, J
;
Hendrickson, RC
;
Gleeson, F
;
Pawson, T
;
Moran, MF
;
Durocher, D
;
Mann, M
;
Hogue, CWV
;
Figeys, D
;
Tyers, M
.
NATURE,
2002, 415 (6868)
:180-183

Ho, Y
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Gruhler, A
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Heilbut, A
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Bader, GD
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Moore, L
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Adams, SL
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Millar, A
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Taylor, P
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Bennett, K
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Boutilier, K
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Yang, LY
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Wolting, C
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Donaldson, I
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Schandorff, S
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Shewnarane, J
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Vo, M
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Taggart, J
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Goudreault, M
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Muskat, B
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Alfarano, C
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Dewar, D
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Lin, Z
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Michalickova, K
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Willems, AR
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Sassi, H
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Nielsen, PA
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Rasmussen, KJ
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Andersen, JR
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Johansen, LE
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Hansen, LH
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Jespersen, H
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Podtelejnikov, A
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Nielsen, E
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Crawford, J
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Poulsen, V
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Sorensen, BD
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Matthiesen, J
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Hendrickson, RC
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Gleeson, F
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Pawson, T
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Moran, MF
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Durocher, D
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Mann, M
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Hogue, CWV
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Figeys, D
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada

Tyers, M
论文数: 0 引用数: 0
h-index: 0
机构: MDS Proteom, Toronto, ON M9W 7H4, Canada
[30]
Probing proteomes using capillary isoelectric focusing-electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
[J].
Jensen, PK
;
Pasa-Tolic, L
;
Anderson, GA
;
Horner, JA
;
Lipton, MS
;
Bruce, JE
;
Smith, RD
.
ANALYTICAL CHEMISTRY,
1999, 71 (11)
:2076-2084

Jensen, PK
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Pasa-Tolic, L
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Anderson, GA
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Horner, JA
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Lipton, MS
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Bruce, JE
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA

Smith, RD
论文数: 0 引用数: 0
h-index: 0
机构:
Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA Pacific NW Lab, Environm Mol Sci Lab, Richland, WA 99352 USA