Clinico-genomic profiling and clonal dynamic modeling of TP53-aberrant myelodysplastic syndrome and acute myeloid leukemia

被引:29
作者
Patel, Shyam A. [1 ]
Lloyd, Maxwell R. [2 ]
Cerny, Jan [1 ]
Shi, Qiming [1 ,3 ]
Simin, Karl [4 ]
Ediriwickrema, Asiri [5 ]
Hutchinson, Lloyd [6 ]
Miron, Patricia M. [6 ]
Higgins, Anne W. [6 ]
Ramanathan, Muthalagu [1 ]
Gerber, Jonathan M. [1 ]
机构
[1] Univ Massachusetts, UMass Mem Med Ctr, Dept Med Hematol & Oncol, Med Sch, 55 Lake Ave North, Worcester, MA 01655 USA
[2] Beth Israel Deaconess Med Ctr, Dept Med, Boston, MA 02215 USA
[3] Univ Massachusetts, Dept Populat & Quantitat Hlth Sci, Med Sch, Worcester, MA 01655 USA
[4] Univ Massachusetts, Dept Mol Cell & Canc Biol, Med Sch, Worcester, MA 01655 USA
[5] Stanford Univ, Inst Stem Cell Biol & Regenerat Med, Dept Med, Div Hematol, Stanford, CA 94305 USA
[6] Univ Massachusetts, UMass Mem Med Ctr, Dept Pathol, Med Sch, Worcester, MA 01655 USA
关键词
Myelodysplastic syndrome; acute myeloid leukemia; TP53; hematopoietic stem cell; clonal dynamics; hypomethylating agents; COMPLEX KARYOTYPE; P53; MUTATIONS; CANCER; TP53; DATABASE; IMPACT; ADULTS; AML;
D O I
10.1080/10428194.2021.1957869
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
TP53-aberrant myelodysplastic syndrome and acute myeloid leukemia have dismal outcomes. Here, we define the clinico-genomic landscape of TP53 disruptions in 40 patients and employ clonal dynamic modeling to map the mutational hierarchy against clinical outcomes. Most TP53 mutations (45.2%) localized to the L3 loop or LSH motif of the DNA-binding domain. TP53 disruptions had high co-occurrence with mutations in epigenetic regulators, spliceosome machinery, and cohesin complex and low co-occurrence with mutations in proliferative signaling genes. Ancestral and descendant TP53 mutations constituted measurable residual disease and fueled relapse. High mutant TP53 gene dosage predicted low durability of remission. The median overall survival (OS) was 280 days. Hypomethylating agent-based therapy served as an effective bridge to transplant, leading to improved median OS compared to patients who did not receive a transplant (14.7 vs. 5.1 months). OS was independent of the genomic location of TP53 disruption, which has implications for rational therapeutic design.
引用
收藏
页码:3348 / 3360
页数:13
相关论文
共 35 条
[1]   The 2016 revision to the World Health Organization classification of myeloid neoplasms and acute leukemia [J].
Arber, Daniel A. ;
Orazi, Attilio ;
Hasserjian, Robert ;
Thiele, Jurgen ;
Borowitz, Michael J. ;
Le Beau, Michelle M. ;
Bloomfield, Clara D. ;
Cazzola, Mario ;
Vardiman, James W. .
BLOOD, 2016, 127 (20) :2391-2405
[2]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[3]   BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis [J].
Bagger, Frederik Otzen ;
Sasivarevic, Damir ;
Sohi, Sina Hadi ;
Laursen, Linea Goricke ;
Pundhir, Sachin ;
Sonderby, Casper Kaae ;
Winther, Ole ;
Rapin, Nicolas ;
Porse, Bo T. .
NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) :D917-D924
[4]   Implications ofTP53allelic state for genome stability, clinical presentation and outcomes in myelodysplastic syndromes [J].
Bernard, Elsa ;
Nannya, Yasuhito ;
Hasserjian, Robert P. ;
Devlin, Sean M. ;
Tuechler, Heinz ;
Medina-Martinez, Juan S. ;
Yoshizato, Tetsuichi ;
Shiozawa, Yusuke ;
Saiki, Ryunosuke ;
Malcovati, Luca ;
Levine, Max F. ;
Arango, Juan E. ;
Zhou, Yangyu ;
Sole, Francesc ;
Cargo, Catherine A. ;
Haase, Detlef ;
Creignou, Maria ;
Germing, Ulrich ;
Zhang, Yanming ;
Gundem, Gunes ;
Sarian, Araxe ;
van de Loosdrecht, Arjan A. ;
Jadersten, Martin ;
Tobiasson, Magnus ;
Kosmider, Olivier ;
Follo, Matilde Y. ;
Thol, Felicitas ;
Pinheiro, Ronald F. ;
Santini, Valeria ;
Kotsianidis, Ioannis ;
Boultwood, Jacqueline ;
Santos, Fabio P. S. ;
Schanz, Julie ;
Kasahara, Senji ;
Ishikawa, Takayuki ;
Tsurumi, Hisashi ;
Takaori-Kondo, Akifumi ;
Kiguchi, Toru ;
Polprasert, Chantana ;
Bennett, John M. ;
Klimek, Virginia M. ;
Savona, Michael R. ;
Belickova, Monika ;
Ganster, Christina ;
Palomo, Laura ;
Sanz, Guillermo ;
Ades, Lionel ;
Della Porta, Matteo Giovanni ;
Smith, Alexandra G. ;
Werner, Yesenia .
NATURE MEDICINE, 2020, 26 (10) :1549-+
[5]   TP53 gene mutation is frequent in patients with acute myeloid leukemia and complex karyotype, and is associated with very poor prognosis [J].
Bowen, D. ;
Groves, M. J. ;
Burnett, A. K. ;
Patel, Y. ;
Allen, C. ;
Green, C. ;
Gale, R. E. ;
Hills, R. ;
Linch, D. C. .
LEUKEMIA, 2009, 23 (01) :203-206
[6]   Pretreatment cytogenetic abnormalities are predictive of induction success, cumulative incidence of relapse, and overall survival in adult patients with de novo acute myeloid leukemia:: results from Cancer and Leukemia Group B (CALGB 8461) [J].
Byrd, JC ;
Mrózek, K ;
Dodge, RK ;
Carroll, AJ ;
Edwards, CG ;
Arthur, DC ;
Pettenati, MJ ;
Patil, SR ;
Rao, KW ;
Watson, MS ;
Koduru, PRK ;
Moore, JO ;
Stone, RM ;
Mayer, RJ ;
Feldman, EJ ;
Davey, FR ;
Schiffer, CA ;
Larson, RA ;
Bloomfield, CD .
BLOOD, 2002, 100 (13) :4325-4336
[7]   The Gene Ontology Resource: 20 years and still GOing strong [J].
Carbon, S. ;
Douglass, E. ;
Dunn, N. ;
Good, B. ;
Harris, N. L. ;
Lewis, S. E. ;
Mungall, C. J. ;
Basu, S. ;
Chisholm, R. L. ;
Dodson, R. J. ;
Hartline, E. ;
Fey, P. ;
Thomas, P. D. ;
Albou, L. P. ;
Ebert, D. ;
Kesling, M. J. ;
Mi, H. ;
Muruganujian, A. ;
Huang, X. ;
Poudel, S. ;
Mushayahama, T. ;
Hu, J. C. ;
LaBonte, S. A. ;
Siegele, D. A. ;
Antonazzo, G. ;
Attrill, H. ;
Brown, N. H. ;
Fexova, S. ;
Garapati, P. ;
Jones, T. E. M. ;
Marygold, S. J. ;
Millburn, G. H. ;
Rey, A. J. ;
Trovisco, V. ;
dos Santos, G. ;
Emmert, D. B. ;
Falls, K. ;
Zhou, P. ;
Goodman, J. L. ;
Strelets, V. B. ;
Thurmond, J. ;
Courtot, M. ;
Osumi-Sutherland, D. ;
Parkinson, H. ;
Roncaglia, P. ;
Acencio, M. L. ;
Kuiper, M. ;
Laegreid, A. ;
Logie, C. ;
Lovering, R. C. .
NUCLEIC ACIDS RESEARCH, 2019, 47 (D1) :D330-D338
[8]   The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data [J].
Cerami, Ethan ;
Gao, Jianjiong ;
Dogrusoz, Ugur ;
Gross, Benjamin E. ;
Sumer, Selcuk Onur ;
Aksoy, Buelent Arman ;
Jacobsen, Anders ;
Byrne, Caitlin J. ;
Heuer, Michael L. ;
Larsson, Erik ;
Antipin, Yevgeniy ;
Reva, Boris ;
Goldberg, Arthur P. ;
Sander, Chris ;
Schultz, Nikolaus .
CANCER DISCOVERY, 2012, 2 (05) :401-404
[9]   Therapeutic targeting of mutant p53 in pediatric acute lymphoblastic leukemia [J].
Demir, Salih ;
Boldrin, Elena ;
Sun, Qian ;
Hampp, Stephanie ;
Tausch, Eugen ;
Eckert, Cornelia ;
Ebinger, Martin ;
Handgretinger, Rupert ;
te Kronnie, Geertruy ;
Wiesmueller, Lisa ;
Stilgenbauer, Stephan ;
Selivanova, Galina ;
Debatin, Klaus-Michael ;
Meyer, Lueder Hinrich .
HAEMATOLOGICA, 2020, 105 (01) :170-181
[10]   Diagnosis and management of AML in adults: 2017 ELN recommendations from an international expert panel [J].
Doehner, Hartmut ;
Estey, Elihu ;
Grimwade, David ;
Amadori, Sergio ;
Appelbaum, Frederick R. ;
Buechner, Thomas ;
Dombret, Herve ;
Ebert, Benjamin L. ;
Fenaux, Pierre ;
Larson, Richard A. ;
Levine, Ross L. ;
Lo-Coco, Francesco ;
Naoe, Tomoki ;
Niederwieser, Dietger ;
Ossenkoppele, Gert J. ;
Sanz, Miguel ;
Sierra, Jorge ;
Tallman, Martin S. ;
Tien, Hwei-Fang ;
Wei, Andrew H. ;
Lowenberg, Bob ;
Bloomfield, Clara D. .
BLOOD, 2017, 129 (04) :424-447