Somatic Mosaicism in the Human Genome

被引:108
作者
Freed, Donald [1 ,2 ]
Stevens, Eric L. [2 ,3 ]
Pevsner, Jonathan [1 ,2 ,3 ]
机构
[1] Johns Hopkins Sch Med, Program Biochem Cellular & Mol Biol, Baltimore, MD 21205 USA
[2] Kennedy Krieger Inst, Dept Neurol, Baltimore, MD 21205 USA
[3] Johns Hopkins Sch Med, Dept Psychiat & Behav Sci, Baltimore, MD 21205 USA
关键词
mutation; somatic; germline; mosaicism; complex disease; retrotransposition; neurodegeneration; aging; COPY-NUMBER VARIATION; CREUTZFELDT-JAKOB-DISEASE; DETECTABLE CLONAL MOSAICISM; NUCLEOTIDE EXCISION-REPAIR; TRIPLET REPEAT EXPANSIONS; IN-VIVO REVERSION; SINGLE-CELL; UNIPARENTAL DISOMY; ALZHEIMERS-DISEASE; CHROMOSOMAL MOSAICISM;
D O I
10.3390/genes5041064
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Somatic mosaicism refers to the occurrence of two genetically distinct populations of cells within an individual, derived from a postzygotic mutation. In contrast to inherited mutations, somatic mosaic mutations may affect only a portion of the body and are not transmitted to progeny. These mutations affect varying genomic sizes ranging from single nucleotides to entire chromosomes and have been implicated in disease, most prominently cancer. The phenotypic consequences of somatic mosaicism are dependent upon many factors including the developmental time at which the mutation occurs, the areas of the body that are affected, and the pathophysiological effect(s) of the mutation. The advent of second- generation sequencing technologies has augmented existing array-based and cytogenetic approaches for the identification of somatic mutations. We outline the strengths and weaknesses of these techniques and highlight recent insights into the role of somatic mosaicism in causing cancer, neurodegenerative, monogenic, and complex disease.
引用
收藏
页码:1064 / 1094
页数:31
相关论文
共 215 条
[41]   Advances in Whole-Genome Genetic Testing: From Chromosomes to Microarrays [J].
Crotwell, Patricia L. ;
Hoyme, H. Eugene .
CURRENT PROBLEMS IN PEDIATRIC AND ADOLESCENT HEALTH CARE, 2012, 42 (03) :47-73
[42]   Tuberous sclerosis [J].
Curatolo, Paolo ;
Bombardieri, Roberta ;
Jozwiak, Sergiusz .
LANCET, 2008, 372 (9639) :657-668
[43]   BIOLOGICAL MECHANISMS UNDERLYING AGING PROCESS [J].
CURTIS, HJ .
SCIENCE, 1963, 141 (358) :686-+
[44]   Early-onset ataxia with ocular motor apraxia and hypoalbuminemia is caused by mutations in a new HIT superfamily gene [J].
Date, H ;
Onodera, O ;
Tanaka, H ;
Iwabuchi, K ;
Uekawa, K ;
Igarashi, S ;
Koike, R ;
Hiroi, T ;
Yuasa, T ;
Awaya, Y ;
Sakai, T ;
Takahashi, T ;
Nagatomo, H ;
Sekijima, Y ;
Kawachi, I ;
Takiyama, Y ;
Nishizawa, M ;
Fukuhara, N ;
Saito, K ;
Sugano, S ;
Tsuji, S .
NATURE GENETICS, 2001, 29 (02) :184-188
[45]   Synaptic, transcriptional and chromatin genes disrupted in autism [J].
De Rubeis, Silvia ;
He, Xin ;
Goldberg, Arthur P. ;
Poultney, Christopher S. ;
Samocha, Kaitlin ;
Cicek, A. Ercument ;
Kou, Yan ;
Liu, Li ;
Fromer, Menachem ;
Walker, Susan ;
Singh, Tarjinder ;
Klei, Lambertus ;
Kosmicki, Jack ;
Fu, Shih-Chen ;
Aleksic, Branko ;
Biscaldi, Monica ;
Bolton, Patrick F. ;
Brownfeld, Jessica M. ;
Cai, Jinlu ;
Campbell, Nicholas G. ;
Carracedo, Angel ;
Chahrour, Maria H. ;
Chiocchetti, Andreas G. ;
Coon, Hilary ;
Crawford, Emily L. ;
Crooks, Lucy ;
Curran, Sarah R. ;
Dawson, Geraldine ;
Duketis, Eftichia ;
Fernandez, Bridget A. ;
Gallagher, Louise ;
Geller, Evan ;
Guter, Stephen J. ;
Hill, R. Sean ;
Ionita-Laza, Iuliana ;
Gonzalez, Patricia Jimenez ;
Kilpinen, Helena ;
Klauck, Sabine M. ;
Kolevzon, Alexander ;
Lee, Irene ;
Lei, Jing ;
Lehtimaeki, Terho ;
Lin, Chiao-Feng ;
Ma'ayan, Avi ;
Marshall, Christian R. ;
McInnes, Alison L. ;
Neale, Benjamin ;
Owen, Michael J. ;
Ozaki, Norio ;
Parellada, Mara .
NATURE, 2014, 515 (7526) :209-+
[46]   Somatic mosaicism in healthy human tissues [J].
De, Subhajyoti .
TRENDS IN GENETICS, 2011, 27 (06) :217-223
[47]   Comprehensive human genome amplification using multiple displacement amplification [J].
Dean, FB ;
Hosono, S ;
Fang, LH ;
Wu, XH ;
Faruqi, AF ;
Bray-Ward, P ;
Sun, ZY ;
Zong, QL ;
Du, YF ;
Du, J ;
Driscoll, M ;
Song, WM ;
Kingsmore, SF ;
Egholm, M ;
Lasken, RS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (08) :5261-5266
[48]   Haplotype Counting by Next-Generation Sequencing for Ultrasensitive Human DNA Detection [J].
Debeljak, Marija ;
Freed, Donald N. ;
Welch, Jane A. ;
Haley, Lisa ;
Beierl, Katie ;
Iglehart, Brian S. ;
Pallavajjala, Aparna ;
Gocke, Christopher D. ;
Leffell, Mary S. ;
Lin, Ming-Tseh ;
Pevsner, Jonathan ;
Wheelan, Sarah J. ;
Eshleman, James R. .
JOURNAL OF MOLECULAR DIAGNOSTICS, 2014, 16 (05) :495-503
[49]   Expanding the computational toolbox for mining cancer genomes [J].
Ding, Li ;
Wendl, Michael C. ;
McMichael, Joshua F. ;
Raphael, Benjamin J. .
NATURE REVIEWS GENETICS, 2014, 15 (08) :556-570
[50]   G-protein-coupled receptors and cancer [J].
Dorsam, Robert T. ;
Gutkind, J. Silvio .
NATURE REVIEWS CANCER, 2007, 7 (02) :79-94