An improved model for fragment-based lead generation at AstraZeneca

被引:64
作者
Fuller, Nathan [1 ,5 ]
Spadola, Loredana [2 ,5 ]
Cowen, Scott [1 ]
Patel, Joe [1 ]
Schonherr, Heike [1 ]
Cao, Qing [1 ]
McKenzie, Andrew [1 ,6 ]
Edfeldt, Fredrik [3 ]
Rabow, Al [4 ]
Goodnow, Robert [1 ]
机构
[1] AstraZeneca, Discovery Sci, Innovat Med & Early Dev Biotech Unit, 35 Gatehouse Dr, Waltham, MA 02451 USA
[2] AstraZeneca, Discovery Sci, Innovat Med & Early Dev Biotech Unit, Alderley Pk, Macclesfield SK10 4TG, Cheshire, England
[3] AstraZeneca, Discovery Sci, Innovat Med & Early Dev Biotech Unit, Pepparedsleden 1, S-43183 Molndal, Sweden
[4] AstraZeneca, Oncol, Innovat Med & Early Dev Biotech Unit, Alderley Pk, Macclesfield SK10 4TG, Cheshire, England
[5] Rodin Therapeut, 400 Technol Sq,10th Floor, Cambridge, MA 02139 USA
[6] Moderna Therapeut, 200 Technol Sq, Cambridge, MA 02139 USA
关键词
DRUG DISCOVERY; MOLECULAR COMPLEXITY; COVALENT DRUGS; DIVERSITY; INHIBITORS; AFFINITY; VOLUME; NMR; SAR;
D O I
10.1016/j.drudis.2016.04.023
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Modest success rates in fragment-based lead generation (FBLG) projects at AstraZeneca (AZ) prompted operational changes to improve performance. In this review, we summarize these changes, emphasizing the construction and composition of the AZ fragment library, screening practices and working model. We describe the profiles of the screening method for specific fragment subsets and statistically assess our ability to follow up on fragment hits through near-neighbor selection. Performance analysis of our second-generation fragment library (FL2) in screening campaigns illustrates the complementary nature of flat and 3D fragments in exploring protein-binding pockets and highlights our ability to deliver fragment hits using multiple screening techniques for various target classes. The new model has had profound impact on the successful delivery of lead series to drug discovery projects.
引用
收藏
页码:1272 / 1283
页数:12
相关论文
共 38 条
[1]   An integrated approach to fragment-based lead generation: Philosophy, strategy and case studies from AstraZeneca's drug discovery programmes [J].
Albert, Jeffrey S. ;
Blomberg, Niklas ;
Breeze, Alexander L. ;
Brown, Alastair J. H. ;
Burrows, Jeremy N. ;
Edwards, Philip D. ;
Folmer, Rutger H. A. ;
Geschwindner, Stefan ;
Griffen, Ed J. ;
Kenny, Peter W. ;
Nowak, Thorsten ;
Olsson, Lise-Lotte ;
Sanganee, Hitesh ;
Shapiro, Adam B. .
CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2007, 7 (16) :1600-1629
[2]  
[Anonymous], 2008, FINGERPRINT THEORY M
[3]   Fragment-based lead discovery grows up [J].
Baker, Monya .
NATURE REVIEWS DRUG DISCOVERY, 2013, 12 (01) :5-10
[4]   A high-throughput screening method for the determination of aqueous drug solubility using laser nephelometry in microtiter plates [J].
Bevan, CD ;
Lloyd, RS .
ANALYTICAL CHEMISTRY, 2000, 72 (08) :1781-1787
[5]   Design of compound libraries for fragment screening [J].
Blomberg, Niklas ;
Cosgrove, David A. ;
Kenny, Peter W. ;
Kolmodin, Karin .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2009, 23 (08) :513-525
[6]  
Bower JF, 2012, CURR PHARM DESIGN, V18, P4685
[7]  
Brennan P J, 1970, Ir J Med Sci, V3, P371, DOI 10.1007/BF02956904
[8]   Lessons for fragment library design: analysis of output from multiple screening campaigns [J].
Chen, I-Jen ;
Hubbard, Roderick E. .
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2009, 23 (08) :603-620
[9]   A rule of three for fragment-based lead discovery? [J].
Congreve, M ;
Carr, R ;
Murray, C ;
Jhoti, H .
DRUG DISCOVERY TODAY, 2003, 8 (19) :876-877
[10]   Lessons learned from the fate of AstraZeneca's drug pipeline: a five-dimensional framework [J].
Cook, David ;
Brown, Dearg ;
Alexander, Robert ;
March, Ruth ;
Morgan, Paul ;
Satterthwaite, Gemma ;
Pangalos, Menelas N. .
NATURE REVIEWS DRUG DISCOVERY, 2014, 13 (06) :419-431