Molecular Mechanisms of Long Noncoding RNAs

被引:4081
作者
Wang, Kevin C. [1 ,2 ]
Chang, Howard Y. [1 ,2 ]
机构
[1] Stanford Univ, Howard Hughes Med Inst, Sch Med, Stanford, CA 94305 USA
[2] Stanford Univ, Program Epithelial Biol, Sch Med, Stanford, CA 94305 USA
关键词
X-CHROMOSOME INACTIVATION; METHYLATED HISTONE H3; REPEAT-CONTAINING RNA; GENE-EXPRESSION; TELOMERASE RNA; ANTISENSE TRANSCRIPTS; XIST RNA; HUMAN-CELLS; HOX LOCI; CHROMATIN;
D O I
10.1016/j.molcel.2011.08.018
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Long noncoding RNAs (IncRNAs) are an important class of pervasive genes involved in a variety of biological functions. Here we discuss the emerging archetypes of molecular functions that IncRNAs execute as signals, decoys, guides, and scaffolds. For each archetype, examples from several disparate biological contexts illustrate the commonality of the molecular mechanisms, and these mechanistic views provide useful explanations and predictions of biological outcomes. These archetypes of IncRNA function may be a useful framework to consider how IncRNAs acquire properties as biological signal transducers and hint at their possible origins in evolution. As new IncRNAs are being discovered at a rapid pace, the molecular mechanisms of IncRNAs are likely to be enriched and diversified.
引用
收藏
页码:904 / 914
页数:11
相关论文
共 82 条
[11]   Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in s.: cerevisiae [J].
Camblong, Jurgi ;
Iglesias, Nahid ;
Fickentscher, Céline ;
Dieppois, Guennaelle ;
Stutz, Françoise .
CELL, 2007, 131 (04) :706-717
[12]   Telomerase RNA structure and function: implications for dyskeratosis congenita [J].
Chen, JL ;
Greider, CW .
TRENDS IN BIOCHEMICAL SCIENCES, 2004, 29 (04) :183-192
[13]   Template boundary definition in mammalian telomerase [J].
Chen, JL ;
Greider, CW .
GENES & DEVELOPMENT, 2003, 17 (22) :2747-2752
[14]   Physiological assembly and activity of human telomerase complexes [J].
Collins, Kathleen .
MECHANISMS OF AGEING AND DEVELOPMENT, 2008, 129 (1-2) :91-98
[15]   Regulatory roles of natural antisense transcripts [J].
Faghihi, Mohammad Ali ;
Wahlestedt, Claes .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2009, 10 (09) :637-643
[16]   TERRA and hnRNPA1 orchestrate an RPA-to-POT1 switch on telomeric single-stranded DNA [J].
Flynn, Rachel Litman ;
Centore, Richard C. ;
O'Sullivan, Roderick J. ;
Rai, Rekha ;
Tse, Alice ;
Zhou Songyang ;
Chang, Sandy ;
Karlseder, Jan ;
Zou, Lee .
NATURE, 2011, 471 (7339) :532-+
[17]   Target mimicry provides a new mechanism for regulation of microRNA activity [J].
Franco-Zorrilla, Jose Manuel ;
Valli, Adrian ;
Todesco, Marco ;
Mateos, Isabel ;
Puga, Maria Isabel ;
Rubio-Somoza, Ignacio ;
Leyva, Antonio ;
Weigel, Detlef ;
Garcia, Juan Antonio ;
Paz-Ares, Javier .
NATURE GENETICS, 2007, 39 (08) :1033-1037
[18]   Regulation of the INK4b-ARF-INK4a tumour suppressor locus:: all for one or one for all [J].
Gil, Jesus ;
Peters, Gordon .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2006, 7 (09) :667-677
[19]   lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements [J].
Gong, Chenguang ;
Maquat, Lynne E. .
NATURE, 2011, 470 (7333) :284-+
[20]   Scaffold Proteins: Hubs for Controlling the Flow of Cellular Information [J].
Good, Matthew C. ;
Zalatan, Jesse G. ;
Lim, Wendell A. .
SCIENCE, 2011, 332 (6030) :680-686