Quantum Mechanical/Molecular Mechanical Calculated Reactivity Networks Reveal How Cytochrome P450cam and Its T252A Mutant Select Their Oxidation Pathways

被引:69
作者
Wang, Binju [1 ,2 ]
Li, Chunsen [3 ,4 ]
Dubey, Kshatresh Dutta [1 ,2 ]
Shaik, Sason [1 ,2 ]
机构
[1] Hebrew Univ Jerusalem, Inst Chem, IL-91904 Jerusalem, Israel
[2] Hebrew Univ Jerusalem, Lise Meitner Minerva Ctr Computat Quantum Chem, IL-91904 Jerusalem, Israel
[3] Chinese Acad Sci, Fujian Inst Res Struct Matter, State Key Lab Struct Chem, Fuzhou 350002, Fujian, Peoples R China
[4] Fujian Prov Key Lab Theoret & Computat Chem, Xiamen 361005, Fujian, Peoples R China
关键词
COMPOUND-I; CATALYTIC CYCLE; SULFOXIDATION REACTIONS; OXYGENATION REACTIONS; ELECTRONIC-STRUCTURE; SULFUR OXIDATION; ACTIVE OXIDANT; HIGH-SPIN; QM/MM; ACTIVATION;
D O I
10.1021/jacs.5b02800
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Quantum mechanical/molecular mechanical calculations address the longstanding-question of a "second oxidant" in P450 enzymes wherein the proton-shuttle, which leads to formation of the "primary-oxidant" Compound I (Cpd I), was severed by mutating the crucial residue (in P450cam: Threonine-252-to-Alanine, hence T252A). Investigating the oxidant candidates Cpd I, ferric hydroperoxide, and ferric hydrogen peroxide (Fe-III(O2H2)), and their reactions, generates reactivity networks which enable us to rule out a "second oxidant" and at the same time identify an additional coupling pathway that is responsible for the epoxidation of 5-methylenylcamphor by the T252A mutant. In this "second-coupling pathway", the reaction starts with the Fe-III(O2H2) intermediate, which transforms to Cpd I via a O-O homolysis/H-abstraction mechanism. The persistence of Fe-III(O2H2) and its oxidative reactivity are shown to be determined by interplay of substrate and protein. The substrate 5-methylenylcamphor prevents H2O2 release, while the protein controls the Fe-III(O2H2) conversion to Cpd I by nailing through hydrogen-bonding interactions the conformation of the HO center dot radical produced during O-O homolysis. This conformation prevents HO center dot attack on the porphyrin's meso position, as in heme oxygenase, and prefers H-abstraction from (FeOH)-O-IV thereby generating H2O + Cpd I. Cpd I then performs substrate oxidations. Camphor cannot prevent H2O2 release and hence the T252A mutant does not oxidize camphor. This "second pathway" transpires also during H2O2 shunting of the cycle of wild-type P450cam, where the additional hydrogen-bonding with Thr252 prevents H2O2 release, and contributes to a successful Cpd I formation. The present results lead to a revised catalytic cycle of Cytochrome P450cam.
引用
收藏
页码:7379 / 7390
页数:12
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