Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean

被引：828

作者：

Zhou, Zhengkui ^{[1
]}

Jiang, Yu ^{[2
,3
]}

Wang, Zheng ^{[1
]}

Gou, Zhiheng ^{[2
,4
]}

Lyu, Jun ^{[2
]}

Li, Weiyu ^{[1
]}

Yu, Yanjun ^{[5
]}

Shu, Liping ^{[2
]}

Zhao, Yingjun ^{[2
,4
]}

Ma, Yanming ^{[1
]}

Fang, Chao ^{[1
,4
]}

Shen, Yanting ^{[1
,4
]}

Liu, Tengfei ^{[1
,4
]}

Li, Congcong ^{[1
,4
]}

Li, Qing ^{[1
,4
]}

Wu, Mian ^{[1
]}

Wang, Min ^{[1
,4
]}

Wu, Yunshuai ^{[1
]}

Dong, Yang ^{[2
]}

Wan, Wenting ^{[2
]}

Wang, Xiao ^{[2
,4
]}

Ding, Zhaoli ^{[2
]}

Gao, Yuedong ^{[2
]}

Xiang, Hui ^{[2
]}

Zhu, Baoge ^{[1
]}

Lee, Suk-Ha ^{[6
,7
]}

Wang, Wen ^{[2
]}

Tian, Zhixi ^{[1
]}

机构：

[1] Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Cell & Chromosome Engn, Beijing, Peoples R China

[2] Chinese Acad Sci, Kunming Inst Zool, State Key Lab Genet Resources & Evolut, Kunming, Peoples R China

[3] Northwest A&F Univ, Coll Anim Sci & Technol, Yangling, Peoples R China

[4] Univ Chinese Acad Sci, Beijing, Peoples R China

[5] Chinese Acad Sci, Inst Microbiol, Beijing, Peoples R China

[6] Seoul Natl Univ, Dept Plant Sci, Seoul, South Korea

[7] Seoul Natl Univ, Res Inst Agr & Life Sci, Seoul, South Korea

来源：

NATURE BIOTECHNOLOGY | 2015年 / 33卷 / 04期

基金：

中国国家自然科学基金;

关键词：

COPY NUMBER VARIATION; FLAVONOID 3'-HYDROXYLASE GENE; MAP-BASED CLONING; LINKAGE DISEQUILIBRIUM; GENOME ASSOCIATION; LEAFLET SHAPE; DIVERSITY; TRAITS; RICE; ALIGNMENT;

D O I：

10.1038/nbt.3096

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Understanding soybean (Glycine max) domestication and improvement at a genetic level is important to inform future efforts to further improve a crop that provides the world's main source of oilseed. We detect 230 selective sweeps and 162 selected copy number variants by analysis of 302 resequenced wild, landrace and improved soybean accessions at > 11x depth. A genomewide association study using these new sequences reveals associations between 10 selected regions and 9 domestication or improvement traits, and identifies 13 previously uncharacterized loci for agronomic traits including oil content, plant height and pubescence form. Combined with previous quantitative trait loci (QTL) information, we find that, of the 230 selected regions, 96 correlate with reported oil QTLs and 21 contain fatty acid biosynthesis genes. Moreover, we observe that some traits and loci are associated with geographical regions, which shows that soybean populations are structured geographically. This study provides resources for genomics-enabled improvements in soybean breeding.

引用

页码：408 / U125

页数：9

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