Analysis of long-range correlation in sequences data of proteins

被引:7
作者
Isvoran, Adriana
Unipan, Laura
Craciun, Dana
Morariu, Vasile
机构
[1] W Univ Timisoara, Dept Chem, Timisoara 300115, Romania
[2] Univ Agr Sci Banat, Dept Agr, Timisoara 300645, Romania
[3] W Univ Timisoara, Techer Training Dept, Timisoara 300223, Romania
[4] Natl R&D Inst Isotop & Mol Technol, Dept Mol & Biomol Phys, Cluj Napoca 400293, Romania
关键词
sequences of proteins; long-range correlation; spectral coefficient; scaling exponent; Hurst coefficient;
D O I
10.2298/JSC0704383I
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The results presented here suggest the existence of correlations in the sequence data of proteins. 32 proteins, both globular and fibrous, both monomeric and polymeric, were analyzed. The primary structures of these proteins were treated as time series. Three spatial series of data for each sequence of a protein were generated from numerical correspondences between each amino acid and a physical property associated with it, i.e., its electric charge, its polar character and its dipole moment. For each series, the spectral coefficient, the scaling exponent and the Hurst coefficient were determined. The values obtained for these coefficients revealed non-randomness in the series of data.
引用
收藏
页码:383 / 392
页数:10
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