A five-microRNA signature for individualized prognosis evaluation and radiotherapy guidance in patients with diffuse lower-grade glioma

被引:19
作者
Zhang Jian-Hua [1 ]
Hou Ruiqin [1 ]
Pan Yuhualei [2 ]
Gao Yuhan [1 ]
Yang Ying [1 ]
Tian Wenqin [1 ]
Zhu Yan-Bing [2 ]
机构
[1] Peking Univ, Peoples Hosp, Dept Blood Transfus, Beijing, Peoples R China
[2] Capital Univ Med Sci, Expt & Translat Res Ctr, Beijing Friendship Hosp, Beijing, Peoples R China
基金
北京市自然科学基金; 中国国家自然科学基金;
关键词
diffuse lower-grade glioma; microRNA; prognostic; radiotherapeutic response; signature; CENTRAL-NERVOUS-SYSTEM; MIR-155; EXPRESSION; DOWN-REGULATION; IDH2; MUTATIONS; UP-REGULATION; GLIOBLASTOMA; SURVIVAL; GROWTH; CELLS; PROLIFERATION;
D O I
10.1111/jcmm.15377
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Despite the prognostic value of IDH and other gene mutations found in diffuse glioma, markers that judge individual prognosis of patients with diffuse lower-grade glioma (LGG) are still lacking. This study aims to develop an expression-based microRNA signature to provide survival and radiotherapeutic response prediction for LGG patients. MicroRNA expression profiles and relevant clinical information of LGG patients were downloaded from The Cancer Genome Atlas (TCGA; the training group) and the Chinese Glioma Genome Atlas (CGGA; the test group). Cox regression analysis, random survival forests-variable hunting (RSFVH) screening and receiver operating characteristic (ROC) were used to identify the prognostic microRNA signature. ROC and TimeROC curves were plotted to compare the predictive ability of IDH mutation and the signature. Stratification analysis was conducted in patients with radiotherapy information. Gene ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis were performed to explore the biological function of the signature. We identified a five-microRNA signature that can classify patients into low-risk or high-risk group with significantly different survival in the training and test datasets (P < 0.001). The five-microRNA signature was proved to be superior to IDH mutation in survival prediction (AUCtraining = 0.688 vs 0.607). Stratification analysis found the signature could further divide patients after radiotherapy into two risk groups. GO and KEGG analyses revealed that microRNAs from the prognostic signature were mainly enriched in cancer-associated pathways. The newly discovered five-microRNA signature could predict survival and radiotherapeutic response of LGG patients based on individual microRNA expression.
引用
收藏
页码:7504 / 7514
页数:11
相关论文
共 49 条
[1]   Brain tumor epidemiology: Consensus from the Brain Tumor Epidemiology Consortium [J].
Bondy, Melissa L. ;
Scheurer, Michael E. ;
Malmer, Beatrice ;
Barnholtz-Sloan, Jill S. ;
Davis, Faith G. ;
Il'Yasova, Dora ;
Kruchko, Carol ;
McCarthy, Bridget J. ;
Rajaraman, Preetha ;
Schwartzbaum, Judith A. ;
Sadetzki, Siegal ;
Schlehofer, Brigitte ;
Tihan, Tarik ;
Wiemels, Joseph L. ;
Wrensch, Margaret ;
Buffler, Patricia A. .
CANCER, 2008, 113 (07) :1953-1968
[2]   Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas [J].
Brat, Daniel J. ;
Verhaak, Roel G. W. ;
Al-dape, Kenneth D. ;
Yung, W. K. Alfred ;
Salama, Sofie R. ;
Cooper, Lee A. D. ;
Rheinbay, Esther ;
Miller, C. Ryan ;
Vitucci, Mark ;
Morozova, Olena ;
Robertson, A. Gordon ;
Noushmehr, Houtan ;
Laird, Peter W. ;
Cherniack, Andrew D. ;
Akbani, Rehan ;
Huse, Jason T. ;
Ciriello, Giovanni ;
Poisson, Laila M. ;
Barnholtz-Sloan, Jill S. ;
Berger, Mitchel S. ;
Brennan, Cameron ;
Colen, Rivka R. ;
Colman, Howard ;
Flanders, Adam E. ;
Giannini, Caterina ;
Grifford, Mia ;
Iavarone, Antonio ;
Jain, Rajan ;
Joseph, Isaac ;
Kim, Jaegil ;
Kasaian, Katayoon ;
Mikkelsen, Tom ;
Murray, Bradley A. ;
O'Neill, Brian Patrick ;
Pachter, Lior ;
Parsons, Donald W. ;
Sougnez, Carrie ;
Sulman, Erik P. ;
Vandenberg, Scott R. ;
Van Meir, Erwin G. ;
von Deimling, Andreas ;
Zhang, Hailei ;
Crain, Daniel ;
Lau, Kevin ;
Mallery, David ;
Morris, Scott ;
Paulauskis, Joseph ;
Penny, Robert ;
Shelton, Troy ;
Sherman, Mark .
NEW ENGLAND JOURNAL OF MEDICINE, 2015, 372 (26) :2481-2498
[3]   Exosomes of glioma cells deliver miR-148a to promote proliferation and metastasis of glioblastoma via targeting CADM1 [J].
Cai, Qian ;
Zhu, Anding ;
Gong, Li .
BULLETIN DU CANCER, 2018, 105 (7-8) :643-651
[4]  
Cao SZ, 2016, AM J CANCER RES, V6, P2561
[5]   miR-103/miR-195/miR-15b Regulate SALL4 and Inhibit Proliferation and Migration in Glioma [J].
Chen, Li-Ping ;
Zhang, Na-Na ;
Ren, Xue-Qing ;
He, Jie ;
Li, Yu .
MOLECULES, 2018, 23 (11)
[6]   miR-155 is up-regulated in primary and secondary glioblastoma and promotes tumour growth by inhibiting GABA receptors [J].
D'Urso, Pietro I. ;
D'Urso, Oscar F. ;
Storelli, Carlo ;
Mallardo, Massimo ;
Gianfreda, Cosimo Damiano ;
Montinaro, Antonio ;
Cimmino, Antonia ;
Pietro, Caliandro ;
Marsigliante, Santo .
INTERNATIONAL JOURNAL OF ONCOLOGY, 2012, 41 (01) :228-234
[7]   CBTRUS Statistical Report: Primary Brain and Central Nervous System Tumors Diagnosed in the United States in 20052009 [J].
Dolecek, Therese A. ;
Propp, Jennifer M. ;
Stroup, Nancy E. ;
Kruchko, Carol .
NEURO-ONCOLOGY, 2012, 14 :v1-v49
[8]   Molecular Signatures in Hepatocellular Carcinoma: A Step Toward Rationally Designed Cancer Therapy [J].
Erstad, Derek J. ;
Fuchs, Bryan C. ;
Tanabe, Kenneth K. .
CANCER, 2018, 124 (15) :3084-3104
[9]   Transcriptomics-based screening of molecular signatures associated with patients overall survival and their key regulators in subtypes of breast cancer [J].
Eskandari, Elaheh ;
Motalebzadeh, Jamshid .
CANCER GENETICS, 2019, 239 :62-74
[10]   Human Glioma Growth Is Controlled by MicroRNA-10b [J].
Gabriely, Galina ;
Yi, Ming ;
Narayan, Ravi S. ;
Niers, Johanna M. ;
Wurdinger, Thomas ;
Imitola, Jaime ;
Ligon, Keith L. ;
Kesari, Santosh ;
Esau, Christine ;
Stephens, Robert M. ;
Tannous, Bakhos A. ;
Krichevsky, Anna M. .
CANCER RESEARCH, 2011, 71 (10) :3563-3572