INO80 and SWR1 complexes: the non-identical twins of chromatin remodelling

被引:50
作者
Willhoft, Oliver [1 ]
Wigley, Dale B. [1 ]
机构
[1] Imperial Coll London, Fac Med, Dept Infect Dis, Sect Struct & Synthet Biol, London SW7 2AZ, England
基金
英国惠康基金; 英国医学研究理事会;
关键词
ACTIN-RELATED PROTEIN; HISTONE H2A; SACCHAROMYCES-CEREVISIAE; DNA TRANSLOCATION; CRYSTAL-STRUCTURE; SUBUNIT; SWI/SNF; SWITCH; CORE; ACETYLATION;
D O I
10.1016/j.sbi.2019.09.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The INO80 family of chromatin remodellers are multisubunit complexes that perform a variety of tasks on nucleosomes. Family members are built around a heterohexamer of RuvB-like protein, an ATP-dependent DNA translocase,nuclear actin and actin-related proteins, and a few complex-specific subunits. They modify chromatin in a number of ways including nucleosome sliding and exchange of variant histones. Recent structural information on INO80 and SWR1 complexes has revealed similarities in the basic architecture of the complexes. However, structural and biochemical data on the complexes bound to nucleosomes reveal these similarities to be somewhat superficial and their biochemical activities and mechanisms are very different. Consequently, the INO80 family displays a surprising diversity of function that is based upon a similar structural framework.
引用
收藏
页码:50 / 58
页数:9
相关论文
共 76 条
[1]   NuA4-dependent Acetylation of Nucleosomal Histones H4 and H2A Directly Stimulates Incorporation of H2A.Z by the SWR1 Complex [J].
Altaf, Mohammed ;
Auger, Andreanne ;
Monnet-Saksouk, Julie ;
Brodeur, Joelle ;
Piquet, Sandra ;
Cramet, Myriam ;
Bouchard, Nathalie ;
Lacoste, Nicolas ;
Utley, Rhea T. ;
Gaudreau, Luc ;
Cote, Jacques .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (21) :15966-15977
[2]   Cryo-EM structures of the human INO80 chromatin-remodeling complex [J].
Aramayo, Ricardo J. ;
Willhoft, Oliver ;
Ayala, Rafael ;
Bythell-Douglas, Rohan ;
Wigley, Dale B. ;
Zhang, Xiaodong .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2018, 25 (01) :37-+
[3]   Cryo-EM structures of remodeler-nucleosome intermediates suggest allosteric control through the nucleosome [J].
Armache, Jean Paul ;
Gamarra, Nathan ;
Johnson, Stephanie L. ;
Leonard, John D. ;
Wu, Shenping ;
Narlikar, Geeta J. ;
Cheng, Yifan .
ELIFE, 2019, 8
[4]   Structure and regulation of the human INO80-nucleosome complex [J].
Ayala, Rafael ;
Willhoft, Oliver ;
Aramayo, Ricardo J. ;
Wilkinson, Martin ;
McCormack, Elizabeth A. ;
Ocloo, Lorraine ;
Wigley, Dale B. ;
Zhang, Xiaodong .
NATURE, 2018, 556 (7701) :391-+
[5]   Regulation of chromatin by histone modifications [J].
Bannister, Andrew J. ;
Kouzarides, Tony .
CELL RESEARCH, 2011, 21 (03) :381-395
[6]   Acetylation of histone H4 by Esa1 is required for DNA double-strand break repair [J].
Bird, AW ;
Yu, DY ;
Pray-Grant, MG ;
Qiu, QF ;
Harmon, KE ;
Megee, PC ;
Grant, PA ;
Smith, MM ;
Christman, MF .
NATURE, 2002, 419 (6905) :411-415
[7]   Mechanisms of ATP-dependent nucleosome sliding [J].
Bowman, Gregory D. .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2010, 20 (01) :73-81
[8]   The Arp8 and Arp4 module acts as a DNA sensor controlling INO80 chromatin remodeling [J].
Brahma, Sandipan ;
Ngubo, Mzwanele ;
Paul, Somnath ;
Udugama, Maheshi ;
Bartholomew, Blaine .
NATURE COMMUNICATIONS, 2018, 9
[9]   INO80 exchanges H2A.Z for H2A by translocating on DNA proximal to histone dimers [J].
Brahma, Sandipan ;
Udugama, Maheshi I. ;
Kim, Jongseong ;
Hada, Arjan ;
Bhardwaj, Saurabh K. ;
Hailu, Solomon G. ;
Lee, Tae-Hee ;
Bartholomew, Blaine .
NATURE COMMUNICATIONS, 2017, 8
[10]   Two actin-related proteins are shared functional components of the chromatin-remodeling complexes RSC and SWI/SNF [J].
Cairns, BR ;
Erdjument-Bromage, H ;
Tempst, P ;
Winston, F ;
Kornberg, RD .
MOLECULAR CELL, 1998, 2 (05) :639-651